RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HIST1H1BP16401 226 aaKnown RBP10.58□□□□□ -0.72
LINC00540-203ENST00000631321 NPPCP23582 126 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 TLE1Q04724 770 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 C4orf17Q53FE4 359 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 COA6Q5JTJ3 125 aaKnown RBP10.58□□□□□ -0.72
LINC00540-203ENST00000631321 OR5B12Q96R08 314 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 IFI27L2Q9H2X8 130 aa10.58□□□□□ -0.72
LINC00540-203ENST00000631321 C11orf94C9JXX5 98 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 M0R1X1 148 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 PDE6DO43924 150 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 GGCTO75223 188 aaKnown RBP10.57□□□□□ -0.72
LINC00540-203ENST00000631321 WT1P19544 449 aaPredicted RBP10.57□□□□□ -0.72
LINC00540-203ENST00000631321 KIR2DS2P43631 304 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 PRAMEF5Q5TYX0 476 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 CDPF1Q6NVV7 123 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 GCSAMQ8N6F7 178 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 ZNF383Q8NA42 475 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 OR4A16Q8NH70 328 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 PTPRBP23467 1997 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 URB1O60287 2271 aaKnown RBP10.57□□□□□ -0.72
LINC00540-203ENST00000631321 CACNA1DQ01668 2161 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 TYMSP04818 313 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 CGB3P0DN86 165 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 CGB7P0DN87 165 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 SRP14P37108 136 aaKnown RBP10.57□□□□□ -0.72
LINC00540-203ENST00000631321 OPRK1P41145 380 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 RELBQ01201 579 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 LTC4SQ16873 150 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 TMEM183AQ8IXX5 376 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 DDB2Q92466 427 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 S100PBPQ96BU1 408 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 HIST1H2BLQ99880 126 aa10.57□□□□□ -0.72
LINC00540-203ENST00000631321 MBD3L4A6NDZ8 208 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 MBD3L3A6NE82 208 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 MBD3L5A6NJ08 208 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 TMPRSS2O15393 492 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 LHBP01229 141 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 IGHV3-13P01766 116 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 PDZD11Q5EBL8 140 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 SEM1Q6ZVN7 128 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 MBD3L2Q8NHZ7 208 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 PRDM13Q9H4Q3 707 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 KCNIP2Q9NS61 270 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 DUSP13Q9UII6 198 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 GALR2O43603 387 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 GFRA3O60609 400 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 DEFA4P12838 97 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 CD99P14209 185 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 FABP4P15090 132 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 ZNF134P52741 427 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 FAM3BP58499 235 aaPredicted RBP10.56□□□□□ -0.72
LINC00540-203ENST00000631321 ERVK-16P61578 105 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 RTP5Q14D33 572 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 RPL39P5Q59GN2 51 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 GCSAMLQ5JQS6 135 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 TREML4Q6UXN2 200 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 LRP11Q86VZ4 500 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 NECAP1Q8NC96 275 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 MEGF10Q96KG7 1140 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 PFDN5Q99471 154 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 ELOVL1Q9BW60 279 aa10.56□□□□□ -0.72
LINC00540-203ENST00000631321 BDP1A6H8Y1 2624 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TRGV8A0A0C4DH27 118 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 PPP5D1E7EU14 171 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 IFNA10P01566 189 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 C3orf36Q3SXR2 165 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TMEM170AQ8WVE7 144 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 PACRGQ96M98 296 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-203ENST00000631321 S1PR3Q99500 378 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TXNDC17Q9BRA2 123 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 CALYQ9NYX4 217 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TRBV23-1A0A0A0MS06 115 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TRAV38-1A0A0B4J264 116 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 F6UZH7 168 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 RRHO14718 337 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 GATCO43716 136 aaKnown RBP10.55□□□□□ -0.72
LINC00540-203ENST00000631321 CEACAM4O75871 244 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 RAB7AP51149 207 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 GNB1P62873 340 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 SSX9Q7RTT3 188 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-203ENST00000631321 MGST2Q99735 147 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 PCGF1Q9BSM1 259 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 HEYLQ9NQ87 328 aaPredicted RBP10.55□□□□□ -0.72
LINC00540-203ENST00000631321 TMEM140Q9NV12 185 aa10.55□□□□□ -0.72
LINC00540-203ENST00000631321 DIDO1Q9BTC0 2240 aaKnown RBP10.55□□□□□ -0.72
LINC00540-203ENST00000631321 PRR14LQ5THK1 2151 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 IGHV3OR15-7A0A075B7D8 119 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 FTH1P19P0C7X4 201 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 PDLIM4P50479 330 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 EDDM3BP56851 147 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 ACTL10Q5JWF8 245 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 LINC01551Q86U37 167 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 OR2T10Q8NGZ9 312 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 OR1P1Q8NH06 330 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 RNASEH2CQ8TDP1 164 aaKnown RBP10.54□□□□□ -0.72
LINC00540-203ENST00000631321 FAM222BQ8WU58 562 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 ACY3Q96HD9 319 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 OR2V2Q96R30 315 aa10.54□□□□□ -0.72
LINC00540-203ENST00000631321 GGTLC1Q9BX51 225 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms