RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 CALHM1Q8IU99 346 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 RPRMLQ8N4K4 120 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 C12orf45Q8N5I9 185 aaPredicted RBP3.78□□□□□ -1.8
VPS29-212ENST00000621131 SPICQ8N5J4 248 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 GVQW1Q8N7I0 195 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 ZNF565Q8N9K5 539 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 UXS1Q8NBZ7 420 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 Q8NFD4 153 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 OR2Z1Q8NG97 314 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 OR4S1Q8NGB4 309 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 OR10AD1Q8NGE0 317 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 OR4D10Q8NGI6 311 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 OR10Z1Q8NGY1 313 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 TERB2Q8NHR7 220 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 DHRS9Q9BPW9 319 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 SULT4A1Q9BR01 284 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 SEC22CQ9BRL7 303 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 ZNF2Q9BSG1 426 aaPredicted RBP3.78□□□□□ -1.8
VPS29-212ENST00000621131 PDCD10Q9BUL8 212 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 ZNF436Q9C0F3 470 aaPredicted RBP3.78□□□□□ -1.8
VPS29-212ENST00000621131 DNTTIP1Q9H147 329 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 COMMD9Q9P000 198 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 PAIP2BQ9ULR5 123 aaKnown RBP3.78□□□□□ -1.8
VPS29-212ENST00000621131 FLVCR2Q9UPI3 526 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 KCNIP3Q9Y2W7 256 aa3.78□□□□□ -1.8
VPS29-212ENST00000621131 MED12LQ86YW9 2145 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 CACNA1CQ13936 2221 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 MEIKINA0A087WXM9 373 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TRBV6-6A0A0A6YYG2 114 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TMEM30CPA0ZSE6 113 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 NKX6-3A6NJ46 265 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TRDCB7Z8K6 153 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 ATP6V1G2-DDX39BF2Z307 99 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 F5H5P2 479 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SIRPB1O00241 398 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 GOSR2O14653 212 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 ABCD4O14678 606 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 CDIPTO14735 213 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SYNGR1O43759 233 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 NOS1APO75052 506 aaPredicted RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 SLC22A5O76082 557 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 HAND1O96004 215 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 IFNA21P01568 189 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 CSN3P07498 182 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 PET100P0DJ07 73 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 PGA5P0DJD9 388 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 ZNF728P0DKX0 622 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SULT1A3P0DMM9 295 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SULT1A4P0DMN0 295 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 NUP62P37198 522 aaPredicted RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 NPBWR2P48146 333 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 NPY4RP50391 375 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SRPXP78539 464 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TNFAIP6P98066 277 aaPredicted RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 ZNF154Q13106 437 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TMEM128Q5BJH2 165 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 C6orf183Q5T699 404 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SHEQ5VZ18 495 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 Q6ZS49 121 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SGPP2Q8IWX5 399 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SLC38A6Q8IZM9 456 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 BATF2Q8N1L9 274 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 SUMF2Q8NBJ7 301 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 RELL2Q8NC24 303 aaPredicted RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 TMEM185AQ8NFB2 350 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 OR4A4PQ8NGN8 299 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 OR10J5Q8NHC4 309 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TYMSOSQ8TAI1 123 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 MARCH1Q8TCQ1 289 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 CA5BP1Q8WTZ4 195 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 LRRC29Q8WV35 223 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 MAFIPQ8WZ33 124 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 RNASE6Q93091 150 aaKnown RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 MRPL24Q96A35 216 aaKnown RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 TLNRD1Q9H1K6 362 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 DYNLRB1Q9NP97 96 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 KCNJ16Q9NPI9 418 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 C1orf123Q9NWV4 160 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TREM2Q9NZC2 230 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 MTCH1Q9NZJ7 389 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TAAR3PQ9P1P4 343 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 TRAPPC2LQ9UL33 140 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 FZR1Q9UM11 496 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 RBM7Q9Y580 266 aaKnown RBP3.77□□□□□ -1.81
VPS29-212ENST00000621131 NPTNQ9Y639 398 aa3.77□□□□□ -1.81
VPS29-212ENST00000621131 MXRA5Q9NR99 2828 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 FREM1Q5H8C1 2179 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 NCOA6Q14686 2063 aaPredicted RBP3.76□□□□□ -1.81
VPS29-212ENST00000621131 IGLV3-9A0A075B6K5 115 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 A0A0B4J2A0 478 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 IGHV3-38A0A0C4DH36 116 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 C5orf51A6NDU8 294 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 OOEPA6NGQ2 149 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 RNF212BA8MTL3 300 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 FAM25EA8MYX2 175 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 H0YL77 283 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 M0R233 179 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 CCL24O00175 119 aa3.76□□□□□ -1.81
VPS29-212ENST00000621131 SDCBPO00560 298 aaPredicted RBP3.76□□□□□ -1.81
VPS29-212ENST00000621131 BET1O15155 118 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms