RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PRSS12P56730 875 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 HTD2P86397 168 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF585BQ52M93 769 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 DCAF12Q5T6F0 453 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 TMEM164Q5U3C3 297 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ANKRD37Q7Z713 158 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 MKXQ8IYA7 352 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 NUDT10Q8NFP7 164 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 SPSB4Q96A44 273 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 BORCS7Q96B45 105 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 SGCZQ96LD1 299 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 RARRES3Q9UL19 164 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 CELSR3Q9NYQ7 3312 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 TRBV20OR9-2A0A075B6H5 130 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 PGPEP1LA6NFU8 196 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 TNFSF15O95150 251 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF16P17020 682 aaPredicted RBP9.1□□□□□ -0.95
UPF3A-212ENST00000619079 MLF1P58340 268 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 TFF3Q07654 80 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 FAM69BQ5VUD6 431 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 STUMQ69YW2 141 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 MOB1BQ7L9L4 216 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 FGFRL1Q8N441 504 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF501Q96CX3 271 aaPredicted RBP9.1□□□□□ -0.95
UPF3A-212ENST00000619079 CBY3A6NI87 242 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 C9JCJ5 164 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 F2Z2F3 143 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 HSPB6O14558 160 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 SH2D1BO14796 132 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF32P17041 273 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 PSG4Q00888 419 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 KRTCAP3Q53RY4 240 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 SHISA6Q6ZSJ9 500 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 BATF2Q8N1L9 274 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 ZIC4Q8N9L1 334 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 OCC1Q8TAD7 63 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 TMEM38BQ9NVV0 291 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 MRPL27Q9P0M9 148 aaKnown RBP9.09□□□□□ -0.95
UPF3A-212ENST00000619079 PPP1R3CQ9UQK1 317 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 RNF114Q9Y508 228 aa9.09□□□□□ -0.95
UPF3A-212ENST00000619079 RBM7Q9Y580 266 aaKnown RBP9.09□□□□□ -0.95
UPF3A-212ENST00000619079 TRAV34A0A0B4J273 112 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 A0A1W2PS18 150 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 PMS2P5A8MQ11 134 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 SIRPB1O00241 398 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 MPDU1O75352 247 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 ZFAND5O76080 213 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 C3orf79P0CE67 100 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 PMCHP20382 165 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 GABRA2P47869 451 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 RHOBP62745 196 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 RHOGP84095 191 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 TGFBR3Q03167 851 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 VAMP3Q15836 100 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 MMD2Q8IY49 270 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 OR5A2Q8NGI9 324 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 OR1L1Q8NH94 360 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 CPT1CQ8TCG5 803 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.09□□□□□ -0.96
UPF3A-212ENST00000619079 NAT8BQ9UHF3 227 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 KCNS2Q9ULS6 477 aa9.09□□□□□ -0.96
UPF3A-212ENST00000619079 CHTOPQ9Y3Y2 248 aaKnown RBP9.09□□□□□ -0.96
UPF3A-212ENST00000619079 RTTNQ86VV8 2226 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 IGLC7A0M8Q6 106 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 OR5B21A6NL26 309 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 CXorf1O96002 111 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 IGLV2-14P01704 120 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 IL11RAQ14626 422 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 IL1F10Q8WWZ1 152 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 SF3B5Q9BWJ5 86 aaKnown RBP9.08□□□□□ -0.96
UPF3A-212ENST00000619079 OR2H1Q9GZK4 316 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 PRDM14Q9GZV8 571 aa9.08□□□□□ -0.96
UPF3A-212ENST00000619079 A0A1W2PR80 420 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 LRRC30A6NM36 301 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 SCRG1O75711 98 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 IGHEP01854 428 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 OCIAD2Q56VL3 154 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 LRRC10Q5BKY1 277 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 OR4P4Q8NGL7 312 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 SPACA9Q96E40 222 aaPredicted RBP9.07□□□□□ -0.96
UPF3A-212ENST00000619079 ZNF837Q96EG3 531 aaPredicted RBP9.07□□□□□ -0.96
UPF3A-212ENST00000619079 WDR83OSQ9Y284 106 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 TRAV9-2A0A087WT02 112 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 A0A1W2PNU3 283 aaPredicted RBP9.07□□□□□ -0.96
UPF3A-212ENST00000619079 A0A1W2PRS3 328 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 TOX4O94842 621 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 THBS3P49746 956 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 ZNF83P51522 516 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 FOXL2P58012 376 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 CEACAM21Q3KPI0 293 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 RAET1LQ5VY80 246 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 MUC15Q8N387 334 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 C1QTNF5Q9BXJ0 243 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 CST9LQ9H4G1 147 aa9.07□□□□□ -0.96
UPF3A-212ENST00000619079 IGLV3-12A0A075B6K2 115 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 IGHV3-15A0A0B4J1V0 119 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 SCO2A0A1W2PP80 73 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 K7ERU9 68 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 DNPH1O43598 174 aa9.06□□□□□ -0.96
UPF3A-212ENST00000619079 HLA-DQA1P01909 254 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms