RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-222	ENST00000601324	TOR1A	O14656	332 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	HSD17B6	O14756	317 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	ENTPD6	O75354	484 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	ZNF682	O95780	498 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	HAND1	O96004	215 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	MOS	P00540	346 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	SERPINA1	P01009	418 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	HLA-DRB1	P01911	266 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CSN2	P05814	226 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CLU	P10909	449 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	BLVRB	P30043	206 aa	Predicted RBP	3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CASQ1	P31415	396 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	BMI1	P35226	326 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	GSS	P48637	474 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CAMLG	P49069	296 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	ZNF137P	P52743	207 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	MADCAM1	Q13477	382 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	ASAH1	Q13510	395 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	UBE2V2	Q15819	145 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	WHAMMP3	Q1A5X7	153 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	RSBN1	Q5VWQ0	802 aa	Predicted RBP	3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	LCN12	Q6JVE5	192 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CD200R1L	Q6Q8B3	271 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	LINC00311	Q8N616	119 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CASTOR1	Q8WTX7	329 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	EMG1	Q92979	244 aa	Known RBP	3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	PINX1	Q96BK5	328 aa	Known RBP	3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	CEP19	Q96LK0	163 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	MBOAT4	Q96T53	435 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	GGTLC1	Q9BX51	225 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	OSBPL10	Q9BXB5	764 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	GAL3ST2	Q9H3Q3	398 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	NCOR1P1	Q9H4R4	102 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	FAM206A	Q9NX38	181 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	DNAJC27	Q9NZQ0	273 aa		3.02	□□□□□ -1.93
VRK3-222	ENST00000601324	LRP2	P98164	4655 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	TRGV10	A0A0A0MS01	117 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324		A0A1B0GTI1	187 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	ZNF729	A6NN14	1252 aa	Predicted RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	NDUFA3	O95167	84 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	NRAS	P01111	189 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	TRBV12-3	P01733	135 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	IGHV3-11	P01762	117 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	IGHV3-7	P01780	117 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	APOC1	P02654	83 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	KRTAP1-4	P0C5Y4	121 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	GSTT2	P0CG29	244 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	GSTT2B	P0CG30	244 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	RBMY1A1	P0DJD3	496 aa	Known RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	CTRB1	P17538	263 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	SPI1	P17947	270 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	PTGFR	P43088	359 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	NPBWR2	P48146	333 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	REG1B	P48304	166 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	CDC42	P60953	191 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	PAX5	Q02548	391 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	AES	Q08117	197 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	EXOSC2	Q13868	293 aa	Known RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	DEFB114	Q30KQ6	69 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	RNF212	Q495C1	297 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	SLX4IP	Q5VYV7	408 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	PLCXD3	Q63HM9	321 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	CTRB2	Q6GPI1	263 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324		Q6P435	159 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	YIPF7	Q8N8F6	280 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	C8orf31	Q8N9H6	132 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	OR52B4	Q8NGK2	314 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	OR8D4	Q8NGM9	314 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	OR2T4	Q8NH00	348 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	TRMT10A	Q8TBZ6	339 aa	Known RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	HAVCR2	Q8TDQ0	301 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	GIPC3	Q8TF64	312 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	C7orf34	Q96L11	122 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	C18orf15	Q96N68	181 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	TEAD3	Q99594	435 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	RASL11B	Q9BPW5	248 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	EBF4	Q9BQW3	602 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	TMEM109	Q9BVC6	243 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	PLEKHA1	Q9HB21	404 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	RBFOX1	Q9NWB1	397 aa	Known RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	EHF	Q9NZC4	300 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	ENPP5	Q9UJA9	477 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	ENPP4	Q9Y6X5	453 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324		V9GYS6	101 aa		3.01	□□□□□ -1.93
VRK3-222	ENST00000601324	FAT3	Q8TDW7	4589 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	3	□□□□□ -1.93
VRK3-222	ENST00000601324	IGKV1-12	A0A0C4DH73	117 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324		A0A1W2PPE3	182 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	LGALS9	O00182	355 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	DHRS3	O75911	302 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	OR2H2	O95918	312 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	IGKV1D-12	P01611	117 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	TTR	P02766	147 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	CD74	P04233	296 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	GAPDH	P04406	335 aa	Known RBP	3	□□□□□ -1.93
VRK3-222	ENST00000601324	GYPB	P06028	91 aa		3	□□□□□ -1.93
VRK3-222	ENST00000601324	ZP3	P21754	424 aa		3	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms