RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SAA1P0DJI8 122 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-215ENST00000601150 GNRHRP30968 328 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 BRWD1-AS2P59051 145 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 MRPS10P82664 201 aaKnown RBP13.16□□□□□ -0.3
TRIM28-215ENST00000601150 PRSS8Q16651 343 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 IDO2Q6ZQW0 420 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 LFNGQ8NES3 379 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 MYOZ3Q8TDC0 251 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 DIRAS2Q96HU8 199 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 FXYD6Q9H0Q3 95 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 RABL2AQ9UBK7 228 aaPredicted RBP13.16□□□□□ -0.3
TRIM28-215ENST00000601150 MTFP1Q9UDX5 166 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 RABL2BQ9UNT1 228 aa13.16□□□□□ -0.3
TRIM28-215ENST00000601150 GABARAPH6UMI1 98 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 RBFOX2O43251 390 aaKnown RBP eCLIP13.15□□□□□ -0.3
TRIM28-215ENST00000601150 SOX15O60248 233 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 CREBL2O60519 120 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-215ENST00000601150 CD33P20138 364 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 SSBP2P81877 361 aaPredicted RBP13.15□□□□□ -0.3
TRIM28-215ENST00000601150 MRGPRG-AS1Q2M3A8 158 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 VAX1Q5SQQ9 334 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 PYHIN1Q6K0P9 492 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 ETV3LQ6ZN32 361 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 SPAG16Q8N0X2 631 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 WFDC9Q8NEX5 89 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 OR5M8Q8NGP6 311 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 MCFD2Q8NI22 146 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 RBM38Q9H0Z9 239 aaKnown RBP13.15□□□□□ -0.3
TRIM28-215ENST00000601150 KLK15Q9H2R5 256 aa13.15□□□□□ -0.3
TRIM28-215ENST00000601150 M0QYG6 137 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 HRASP01112 189 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 IFNA6P05013 189 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 TBPP20226 339 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 MYCNOSP40205 109 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 RAB9AP51151 201 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 DGCR2P98153 550 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 TNXAQ16473 311 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 RNASE10Q5GAN6 216 aaKnown RBP13.14□□□□□ -0.31
TRIM28-215ENST00000601150 AADACL3Q5VUY0 350 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 LPCAT3Q6P1A2 487 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 MMD2Q8IY49 270 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 CMTM1Q8IZ96 169 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 OR51H1Q8NH63 302 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 VSTM2AQ8TAG5 236 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 C4orf3Q8WVX3 66 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 UBE2E2Q96LR5 201 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 AIFM2Q9BRQ8 373 aa13.14□□□□□ -0.31
TRIM28-215ENST00000601150 NXF2Q9GZY0 626 aaKnown RBP13.14□□□□□ -0.31
TRIM28-215ENST00000601150 RSL24D1Q9UHA3 163 aaKnown RBP13.14□□□□□ -0.31
TRIM28-215ENST00000601150 TNCP24821 2201 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 GPR31O00270 319 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 RAMP3O60896 148 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 PGLYRP1O75594 196 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-215ENST00000601150 OR2A4O95047 310 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 CD3DP04234 171 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 CD40LGP29965 261 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 SSBP1Q04837 148 aaKnown RBP13.13□□□□□ -0.31
TRIM28-215ENST00000601150 IL18Q14116 193 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 KIAA0141Q14154 515 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-215ENST00000601150 VKORC1L1Q8N0U8 176 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 LINC00482Q8N8I6 264 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 ZNF491Q8N8L2 437 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 POC5Q8NA72 575 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 TMEM229BQ8NBD8 167 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 CD300LFQ8TDQ1 290 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 RHOVQ96L33 236 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 TMEM68Q96MH6 324 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 OR2A7Q96R45 310 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 ZNF430Q9H8G1 570 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-215ENST00000601150 VSIG4Q9Y279 399 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 MEGF8Q7Z7M0 2845 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 CMYA5Q8N3K9 4069 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 NOTCH1P46531 2555 aa13.13□□□□□ -0.31
TRIM28-215ENST00000601150 G3V4G9 280 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 ZNF701M0R085 212 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-215ENST00000601150 CCL24O00175 119 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 CTDSPLO15194 276 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 ACTL6BO94805 426 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 RLN1P04808 185 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 UCP3P55916 312 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 SAMD5Q5TGI4 173 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 C1QL4Q86Z23 238 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 MRPL41Q8IXM3 137 aaKnown RBP13.12□□□□□ -0.31
TRIM28-215ENST00000601150 PUSL1Q8N0Z8 303 aaKnown RBP13.12□□□□□ -0.31
TRIM28-215ENST00000601150 ARRDC1Q8N5I2 433 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 TMEM167AQ8TBQ9 72 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 SMIM4Q8WVI0 70 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 RAX2Q96IS3 184 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 P2RX4Q99571 388 aa13.12□□□□□ -0.31
TRIM28-215ENST00000601150 TINAGL1Q9GZM7 467 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-215ENST00000601150 MSGN1A6NI15 193 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 KBTBD11O94819 623 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 HPRT1P00492 218 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 S100GP29377 79 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 TNFSF8P32971 234 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 TAS2R31P59538 309 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 TAS2R19P59542 299 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 DEFA6Q01524 100 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 DEFB136Q30KP8 78 aa13.11□□□□□ -0.31
TRIM28-215ENST00000601150 SLC38A6Q8IZM9 456 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms