RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 IER3P46695 156 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 GLIPR1P48060 266 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 FAM206AQ9NX38 181 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 UBR3Q6ZT12 1888 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 MRPL14Q6P1L8 145 aaKnown RBP17.42■□□□□ 0.38
UPF1-207ENST00000599848 C2orf88Q9BSF0 95 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 SLC25A16P16260 332 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 SMCHD1A6NHR9 2005 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 IGKV3D-11A0A0A0MRZ8 115 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 AP4M1O00189 453 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 SSTR5P35346 364 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 SSC4DQ8WTU2 575 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 WDYHV1Q96HA8 205 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 GGACTQ9BVM4 153 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 TRGV2A0A075B6R0 118 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 CGB1A6NKQ9 187 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 H3BRM9 83 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 FOXL2P58012 376 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 TNFRSF9Q07011 255 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 UNC119Q13432 240 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 REC114Q7Z4M0 266 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 TMEM190Q8WZ59 177 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 AQP3Q92482 292 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 ZNF638Q14966 1978 aaKnown RBP17.41■□□□□ 0.38
UPF1-207ENST00000599848 HKR1P10072 659 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 EFNA4P52798 201 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 SUMO2P61956 95 aaKnown RBP17.41■□□□□ 0.38
UPF1-207ENST00000599848 CFAP161Q6P656 301 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 TMEM252Q8N6L7 170 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 Q96M66 194 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 KCNS1Q96KK3 526 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 SIRT4Q9Y6E7 314 aaPredicted RBP17.41■□□□□ 0.38
UPF1-207ENST00000599848 LILRA1O75019 489 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 TNFRSF14Q92956 283 aa17.41■□□□□ 0.38
UPF1-207ENST00000599848 IRF3Q14653 427 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 FAM24BQ8N5W8 94 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 LINC01587Q99440 93 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 SEMA5BQ9P283 1151 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 RNF114Q9Y508 228 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 KBTBD11-OT1A0A1B0GTJ5 212 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 CD74P04233 296 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 FAM3BP58499 235 aaPredicted RBP17.4■□□□□ 0.38
UPF1-207ENST00000599848 JOSD1Q15040 202 aaPredicted RBP17.4■□□□□ 0.38
UPF1-207ENST00000599848 KLHDC2Q9Y2U9 406 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 TIAF1O95411 115 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 TIMP3P35625 211 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 SNAI3Q3KNW1 292 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 OR10D4PQ8NGN7 298 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 SMIM8Q96KF7 97 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 TBX15Q96SF7 602 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 KLK13Q9UKR3 277 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 C7orf66A4D0T2 115 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 IQCF6A8MYZ5 107 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 NPIPB9F8W1W9 429 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 NPIPB7O75200 414 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 NUDT10Q8NFP7 164 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 TAF15Q92804 592 aaKnown RBP eCLIP17.4■□□□□ 0.38
UPF1-207ENST00000599848 VGLL1Q99990 258 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 APCDD1LQ8NCL9 501 aa17.4■□□□□ 0.38
UPF1-207ENST00000599848 SCN1AP35498 2009 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 IGLV3-12A0A075B6K2 115 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 B4DSR2 109 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.39■□□□□ 0.37
UPF1-207ENST00000599848 PTBP3O95758 552 aaKnown RBP17.39■□□□□ 0.37
UPF1-207ENST00000599848 CDKN1AP38936 164 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 HIST1H2BAQ96A08 127 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 SPSB4Q96A44 273 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 IL36RNQ9UBH0 155 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 WNT2P09544 360 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 COL24A1Q17RW2 1714 aa17.39■□□□□ 0.37
UPF1-207ENST00000599848 RPL29P47914 159 aaKnown RBP17.39■□□□□ 0.37
UPF1-207ENST00000599848 CD81P60033 236 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 SDF2L1Q9HCN8 221 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 NMUP48645 174 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 LY6DQ14210 128 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 PLAC1Q9HBJ0 212 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 CENPVL1A0A0U1RR11 272 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 WISP3O95389 354 aaPredicted RBP17.38■□□□□ 0.37
UPF1-207ENST00000599848 ZFP36L1Q07352 338 aaKnown RBP17.38■□□□□ 0.37
UPF1-207ENST00000599848 FAM74A4Q5TZK3 123 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 RNASEH2CQ8TDP1 164 aaKnown RBP17.38■□□□□ 0.37
UPF1-207ENST00000599848 SLC50A1Q9BRV3 221 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 TCTAP57738 103 aa17.38■□□□□ 0.37
UPF1-207ENST00000599848 OOSP1A8MZH6 123 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 NBR2O15453 112 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 IL6RP08887 468 aaPredicted RBP17.37■□□□□ 0.37
UPF1-207ENST00000599848 DTX1Q86Y01 620 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 TMEM167AQ8TBQ9 72 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 HTN3P15516 51 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 NANOS3P60323 173 aaKnown RBP17.37■□□□□ 0.37
UPF1-207ENST00000599848 GPR132Q9UNW8 380 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 MSRB2Q9Y3D2 182 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 TMEM250H0YL14 139 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 GPR146Q96CH1 333 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 CD59P13987 128 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 AWAT1Q58HT5 328 aa17.37■□□□□ 0.37
UPF1-207ENST00000599848 CBY3A6NI87 242 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 CACNG8Q8WXS5 425 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 NPIPB3Q92617 1050 aa17.36■□□□□ 0.37
UPF1-207ENST00000599848 LDLRAD2Q5SZI1 272 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms