RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 LIN54Q6MZP7 749 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 C11orf87Q6NUJ2 197 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 C9orf139Q6ZV77 190 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 SELENOHQ8IZQ5 122 aaKnown RBP7.55□□□□□ -1.2
TRIM28-208ENST00000597172 OR8H3Q8N146 312 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 TEX29Q8N6K0 151 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 TCTEX1D1Q8N7M0 179 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 PIFOQ8TCI5 191 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 CASTOR1Q8WTX7 329 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 MITD1Q8WV92 249 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 WWC2-AS2Q96NR7 200 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 FAM212BQ9NTI7 297 aaPredicted RBP7.55□□□□□ -1.2
TRIM28-208ENST00000597172 SLC35D1Q9NTN3 355 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 LIN7CQ9NUP9 197 aaKnown RBP7.55□□□□□ -1.2
TRIM28-208ENST00000597172 PRELID3BQ9Y3B1 194 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 PCLOQ9Y6V0 5065 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 A0A0B4J2A0 478 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 MDFIC2A0A1B0GVS7 189 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 DBX1A6NMT0 343 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 SRRM4A7MD48 611 aaKnown RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 RBFOX2O43251 390 aaKnown RBP eCLIP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 B3GALNT1O75752 331 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 CD1BP29016 333 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 MC5RP33032 325 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 TAGLNQ01995 201 aaKnown RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 CBX3Q13185 183 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 EBI3Q14213 229 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 DEFB112Q30KQ8 113 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 CCDC144NLQ6NUI1 221 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 LIAT1Q6ZQX7 453 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 LYZL2Q7Z4W2 148 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 C12orf45Q8N5I9 185 aaPredicted RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 LRTM2Q8N967 370 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 C22orf15Q8WYQ4 148 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 ZNF48Q96MX3 618 aaPredicted RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 MS4A7Q9GZW8 240 aaPredicted RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 OR51J1Q9H342 316 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 GPN1Q9HCN4 374 aaPredicted RBP7.54□□□□□ -1.2
TRIM28-208ENST00000597172 SHPKQ9UHJ6 478 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 WASHC3Q9Y3C0 194 aa7.54□□□□□ -1.2
TRIM28-208ENST00000597172 HERC2O95714 4834 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 VGLL3A8MV65 326 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 H7C2Y5 167 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 CREBL2O60519 120 aaPredicted RBP7.53□□□□□ -1.2
TRIM28-208ENST00000597172 S1PR2O95136 353 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 CRYZL1O95825 349 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 HPRT1P00492 218 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 IGLV2-23P01705 113 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 APOA2P02652 100 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 SERPINE2P07093 398 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 SNRNP70P08621 437 aaKnown RBP7.53□□□□□ -1.2
TRIM28-208ENST00000597172 RRASP10301 218 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 ANXA3P12429 323 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 MDKP21741 143 aaPredicted RBP7.53□□□□□ -1.2
TRIM28-208ENST00000597172 KIR2DS2P43631 304 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 DYNLT3P51808 116 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM177Q53S58 311 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM268Q5VZI3 342 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 C11orf88Q6PI97 169 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 THNSL2Q86YJ6 484 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 PDPNQ86YL7 162 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 CADM3Q8N126 398 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 LGI3Q8N145 548 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 CD300LFQ8TDQ1 290 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 SEC22AQ96IW7 307 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 EAF1Q96JC9 268 aaPredicted RBP7.53□□□□□ -1.2
TRIM28-208ENST00000597172 PHB2Q99623 299 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 PRDM13Q9H4Q3 707 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 PLEKHA2Q9HB19 425 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 FAM96BQ9Y3D0 163 aa7.53□□□□□ -1.2
TRIM28-208ENST00000597172 hCG_2014768A0A024R1R8 64 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 A0A0G2JRQ6 117 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 G3V4G9 280 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 ADAP1O75689 374 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 KRASP01116 189 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 IGKV1D-33P01593 117 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 IGKV1-33P01594 117 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 IGKV1-5P01602 117 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 IL6RP08887 468 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 HOXB5P09067 269 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 FBP1P09467 338 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 P0C879 139 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RPA2P15927 270 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 HLA-GP17693 338 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 CNTFRP26992 372 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 G6PCP35575 357 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 F2RL1P55085 397 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RPS16P62249 146 aaKnown RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 HNF4GQ14541 408 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 POU2AF1Q16633 256 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RTL8BQ17RB0 113 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 KPRPQ5T749 579 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 DHRS7BQ6IAN0 325 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 RBMS3Q6XE24 437 aaKnown RBP7.52□□□□□ -1.21
TRIM28-208ENST00000597172 Q6YL49 198 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 Q6ZRM9 215 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 ZNF695Q8IW36 515 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 VKORC1L1Q8N0U8 176 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 Q8N6K4 173 aa7.52□□□□□ -1.21
TRIM28-208ENST00000597172 SLC35G3Q8N808 338 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms