RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 BET1LQ9NYM9 111 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 NUP50Q9UKX7 468 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 HILPDAQ9Y5L2 63 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 A8MV72 311 aaPredicted RBP12.3□□□□□ -0.44
SS18-215ENST00000580642 PITX3O75364 302 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 VENTXO95231 258 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 MOSP00540 346 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 IGKV1-16P04430 117 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 IL6RP08887 468 aaPredicted RBP12.3□□□□□ -0.44
SS18-215ENST00000580642 FBP1P09467 338 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 FOSL1P15407 271 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 UBE2KP61086 200 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 VMA21Q3ZAQ7 101 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 KLF17Q5JT82 389 aaPredicted RBP12.3□□□□□ -0.44
SS18-215ENST00000580642 FOXRED2Q8IWF2 684 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 TEX45Q8NA69 505 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 DMBX1Q8NFW5 382 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 OR2T10Q8NGZ9 312 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 GPR146Q96CH1 333 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 OR10C1Q96KK4 312 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 HARBI1Q96MB7 349 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.3□□□□□ -0.44
SS18-215ENST00000580642 TMEM160Q9NX00 188 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 FKBP11Q9NYL4 201 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 FAM96BQ9Y3D0 163 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 WNK2Q9Y3S1 2297 aa12.3□□□□□ -0.44
SS18-215ENST00000580642 ASH1LQ9NR48 2969 aaKnown RBP12.3□□□□□ -0.44
SS18-215ENST00000580642 CR1P17927 2039 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 CCSO14618 274 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 SIX6O95475 246 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 AVPP01185 164 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 IGHV4-38-2P0DP08 117 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 PSMB6P28072 239 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 G6PCP35575 357 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 RPS16P62249 146 aaKnown RBP12.29□□□□□ -0.44
SS18-215ENST00000580642 ZNF429Q86V71 674 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 PDZD9Q8IXQ8 264 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 PUSL1Q8N0Z8 303 aaKnown RBP12.29□□□□□ -0.44
SS18-215ENST00000580642 OR4D5Q8NGN0 318 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 OR2T35Q8NGX2 323 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 OR52E5Q8NH55 327 aa12.29□□□□□ -0.44
SS18-215ENST00000580642 A0A1W2PRD5 423 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 A0A1W2PRF3 423 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 A0A1W2PRM7 423 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 MPTX1A8MV57 137 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 ST8SIA3O43173 380 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 C1QBP02746 253 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 ID3Q02535 119 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 PDLIM3Q53GG5 364 aaPredicted RBP12.28□□□□□ -0.44
SS18-215ENST00000580642 PPP1R1CQ8WVI7 109 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 CHIAQ9BZP6 476 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 TMEM140Q9NV12 185 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 C1RLQ9NZP8 487 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 CACNG5Q9UF02 275 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 ITGB1BP2Q9UKP3 347 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 PRNDQ9UKY0 176 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 ZNF257Q9Y2Q1 563 aa12.28□□□□□ -0.44
SS18-215ENST00000580642 SMAD7O15105 426 aaKnown RBP12.27□□□□□ -0.45
SS18-215ENST00000580642 MED6O75586 246 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 RLN2P04090 185 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 SLC25A4P12235 298 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 NKX2-1P43699 371 aaPredicted RBP12.27□□□□□ -0.45
SS18-215ENST00000580642 SCGB2A2Q13296 93 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 OR4A47Q6IF82 309 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 NPBQ8NG41 125 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 OR4A16Q8NH70 328 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 TMEM167AQ8TBQ9 72 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 EAF1Q96JC9 268 aaPredicted RBP12.27□□□□□ -0.45
SS18-215ENST00000580642 HYLS1Q96M11 299 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 GSKIPQ9P0R6 139 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 NOTCH2Q04721 2471 aa12.27□□□□□ -0.45
SS18-215ENST00000580642 A0A0G2JRQ6 117 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 SRRM4A7MD48 611 aaKnown RBP12.26□□□□□ -0.45
SS18-215ENST00000580642 UPK2O00526 184 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 MPC2O95563 127 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 IGLV2-23P01705 113 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 LYL1P12980 280 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 HNF1AP20823 631 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 MAS1LP35410 378 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 KRTAP1-1Q07627 177 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 ZFP69Q49AA0 526 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 TMEM65Q6PI78 240 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 Q6ZRM9 215 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 DYNAPQ8N1N2 210 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 Q8N6K4 173 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 OR1S1Q8NH92 325 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 THAP6Q8TBB0 222 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 PRDM13Q9H4Q3 707 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 HSPB7Q9UBY9 170 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 FOXA2Q9Y261 457 aaPredicted RBP12.26□□□□□ -0.45
SS18-215ENST00000580642 POMT1Q9Y6A1 747 aa12.26□□□□□ -0.45
SS18-215ENST00000580642 ITPR3Q14573 2671 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 IGHV3-72A0A0B4J1Y9 119 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 A0A0U1RQK1 487 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 C15orf61A6NNL5 157 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 HMSDA8MTL9 139 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 KBTBD11O94819 623 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 NDUFA3O95167 84 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 IGKV1D-33P01593 117 aa12.25□□□□□ -0.45
SS18-215ENST00000580642 IGKV1-33P01594 117 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms