RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RASSF6Q6ZTQ3 369 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 SUMF2Q8NBJ7 301 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 OR1J4Q8NGS1 313 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 CYGBQ8WWM9 190 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 ASB13Q8WXK3 278 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 PTX4Q96A99 478 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 ANKRD9Q96BM1 317 aaPredicted RBP4.04□□□□□ -1.76
VPS53-219ENST00000576019 TM4SF18Q96CE8 201 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 FXYD5Q96DB9 178 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 ANKRD36BP1Q96IX9 119 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 LINC01587Q99440 93 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 EBNA1BP2Q99848 306 aaKnown RBP4.04□□□□□ -1.76
VPS53-219ENST00000576019 HDHD3Q9BSH5 251 aaPredicted RBP4.04□□□□□ -1.76
VPS53-219ENST00000576019 MRPL20Q9BYC9 149 aaKnown RBP4.04□□□□□ -1.76
VPS53-219ENST00000576019 MROQ9BYG7 248 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 VNN3Q9NY84 501 aa4.04□□□□□ -1.76
VPS53-219ENST00000576019 LOC389332A0A1B0GUA5 103 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 EVPLLA8MZ36 301 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 E5RI56 91 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 INS-IGF2F8WCM5 200 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 PGRMC1O00264 195 aaKnown RBP4.03□□□□□ -1.76
VPS53-219ENST00000576019 GATBO75879 557 aaKnown RBP4.03□□□□□ -1.76
VPS53-219ENST00000576019 KRT75O95678 551 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 FABP1P07148 127 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 CD79BP40259 229 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 CTRLP40313 264 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 ERFP50548 548 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 KRTAP10-3P60369 221 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 ERCC8Q13216 396 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 PNOCQ13519 176 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 TAF1AQ15573 450 aaPredicted RBP4.03□□□□□ -1.76
VPS53-219ENST00000576019 ZNF544Q6NX49 715 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 FBXL22Q6P050 247 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 TMEM205Q6UW68 189 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 SHISA6Q6ZSJ9 500 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 MDP1Q86V88 176 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 CD177Q8N6Q3 437 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 WDSUB1Q8N9V3 476 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 SLC26A10Q8NG04 563 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 GPR32P1Q8NGA4 272 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 OR10G4Q8NGN3 311 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 OR1P1Q8NH06 330 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 DTD1Q8TEA8 209 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 NEURL3Q96EH8 262 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 SNF8Q96H20 258 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 C18orf15Q96N68 181 aa4.03□□□□□ -1.76
VPS53-219ENST00000576019 PCYT1BQ9Y5K3 369 aaPredicted RBP4.03□□□□□ -1.76
VPS53-219ENST00000576019 PCNX3Q9H6A9 2034 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 IGHV1-45A0A0A0MS14 117 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 TMEM238C9JI98 176 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 UPK2O00526 184 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 FFAR1O14842 300 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 CA11O75493 328 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 DTYMKP23919 212 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 PRTN3P24158 256 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 OPRM1P35372 400 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 ARPC4P59998 168 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 SPA17Q15506 151 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 GUK1Q16774 197 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 LRRC75BQ2VPJ9 315 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 C14orf177Q52M58 125 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 FAM162BQ5T6X4 162 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 C1orf195Q5TG92 126 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 HACD4Q5VWC8 232 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 GALNT10Q86SR1 603 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 ZNF329Q86UD4 541 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 GID4Q8IVV7 300 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 RIMKLAQ8IXN7 391 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 MUC15Q8N387 334 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 ZFP62Q8NB50 900 aaPredicted RBP4.02□□□□□ -1.77
VPS53-219ENST00000576019 OR6K3Q8NGY3 331 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 ZNF420Q8TAQ5 688 aaPredicted RBP4.02□□□□□ -1.77
VPS53-219ENST00000576019 C16orf78Q8WTQ4 265 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 CEP19Q96LK0 163 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 RNF157Q96PX1 679 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 CHAC1Q9BUX1 264 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 PECRQ9BY49 303 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 CHST5Q9GZS9 411 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 NUFIP1Q9UHK0 495 aaKnown RBP4.02□□□□□ -1.77
VPS53-219ENST00000576019 PSG11Q9UQ72 335 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 MMACHCQ9Y4U1 282 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 INSIG2Q9Y5U4 225 aa4.02□□□□□ -1.77
VPS53-219ENST00000576019 NCKAP5O14513 1909 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 A0A0D9SEW6 157 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 GOLGA6L4A6NEF3 574 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 FAM183AA6NL82 134 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 BTNL10A8MVZ5 291 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 ARL6IP5O75915 188 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 PRB4P10163 310 aaPredicted RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 OMGP23515 440 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 UBE2AP49459 152 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 CRISP3P54108 245 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 TAS2R43P59537 309 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 ZNF404Q494X3 552 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 ZNF658BQ4V348 819 aaPredicted RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 C9orf129Q5T035 196 aaKnown RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 TNFAIP8L2Q6P589 184 aaPredicted RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 MYPOPQ86VE0 399 aaPredicted RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 ENKURQ8TC29 256 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 AP3S1Q92572 193 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms