RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 Q6Q795 121 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 LCN15Q6UWW0 184 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ADAMTSL5Q6ZMM2 481 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 Q6ZSV7 163 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PRSS45Q7RTY3 260 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 FAM19A5Q7Z5A7 132 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 TMEM123Q8N131 208 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TMEM256Q8N2U0 113 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 GPD1LQ8N335 351 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNF433Q8N7K0 673 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 TMEM178AQ8NBL3 297 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR51A4Q8NGJ6 313 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR2AJ1Q8NGZ0 328 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR10AG1Q8NH19 301 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR1L3Q8NH93 324 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR1L1Q8NH94 360 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PPTC7Q8NI37 304 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 C8orf46Q8TAG6 207 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNRF4Q8WWF5 429 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 RPEQ96AT9 228 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 RBMXL1Q96E39 390 aaKnown RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 KCNS1Q96KK3 526 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 SPATA33Q96N06 139 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PGLYRP2Q96PD5 576 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 GPER1Q99527 375 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ZNF670Q9BS34 389 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 AGMATQ9BSE5 352 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 RNF126Q9BV68 326 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 KCNK15Q9H427 330 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MAP1LC3AQ9H492 121 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 ISG20L2Q9H9L3 353 aaKnown RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 ELOVL3Q9HB03 270 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 SDF2L1Q9HCN8 221 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MANBALQ9NQG1 85 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PRTFDC1Q9NRG1 225 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 CMC2Q9NRP2 79 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 RPRMQ9NS64 109 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 IDI2-AS1Q9NZ38 188 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 EHFQ9NZC4 300 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 TAAR3PQ9P1P4 343 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MDFICQ9P1T7 246 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 MTFP1Q9UDX5 166 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 OR5V1Q9UGF6 321 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 PRO0628Q9UI54 55 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 LOXL2Q9Y4K0 774 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 HEBP2Q9Y5Z4 205 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 SOX21Q9Y651 276 aaPredicted RBP2.69□□□□□ -1.98
VPS35-208ENST00000568612 SPCS1Q9Y6A9 102 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 KIAA1671Q9BY89 1806 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 NINQ8N4C6 2090 aa2.69□□□□□ -1.98
VPS35-208ENST00000568612 DENND4CQ5VZ89 1909 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SCN1AP35498 2009 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 LOC102725191A0A1B0GVB3 256 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PPI3 338 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 A0A1W2PR77 199 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF840PA6NDX5 716 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CASTOR2A6NHX0 329 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF850A8MQ14 1090 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 C9JAW5 83 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 FAM90A26D6RGX4 464 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 ISLRO14498 428 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PRKNO60260 465 aaPredicted RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 DHRS3O75911 302 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SERF1AO75920 110 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR7C1O76099 320 aaPredicted RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 CLDN7O95471 211 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SLC2A10O95528 541 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 OR2H2O95918 312 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 HBE1P02100 147 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CATP04040 527 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 IGKV5-2P06315 115 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CSN3P07498 182 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SP1P08047 785 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 LINC00032P0C843 101 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 FAM106CPP0CH98 169 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 FABP2P12104 132 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PTHLHP12272 177 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 NTF3P20783 257 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 AADACP22760 399 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 GRPRP30550 384 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 G6PCP35575 357 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 VDAC2P45880 294 aaPredicted RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 GALR1P47211 349 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 FUT6P51993 359 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 XGP55808 180 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 NDUFV3P56181 108 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 MTCP1P56278 107 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 KRTDAPP60985 99 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 RPL27P61353 136 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 RND3P61587 244 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 PPP1CBP62140 327 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 SNRPFP62306 86 aaKnown RBP2.68□□□□□ -1.98
VPS35-208ENST00000568612 EWSR1Q01844 656 aaKnown RBP eCLIP2.68□□□□□ -1.98
VPS35-208ENST00000568612 ZNF415Q09FC8 603 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 DIAPH2-AS1Q14236 149 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CD226Q15762 336 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 IGFBP7Q16270 282 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 CCL15Q16663 113 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 IZUMO4Q1ZYL8 232 aa2.68□□□□□ -1.98
VPS35-208ENST00000568612 TBC1D28Q2M2D7 210 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms