RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 SRSF12Q8WXF0 261 aaKnown RBP17.24■□□□□ 0.35
CLN3-232ENST00000568443 RSRP1Q9BUV0 290 aa17.24■□□□□ 0.35
CLN3-232ENST00000568443 ZNF430Q9H8G1 570 aaPredicted RBP17.24■□□□□ 0.35
CLN3-232ENST00000568443 PEF1Q9UBV8 284 aaKnown RBP17.24■□□□□ 0.35
CLN3-232ENST00000568443 IGKV1D-13A0A0B4J2D9 117 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 OR9G9P0C7N8 305 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 SAA1P0DJI8 122 aaPredicted RBP17.23■□□□□ 0.35
CLN3-232ENST00000568443 IGKV1-13P0DP09 117 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 RPL30P62888 115 aaKnown RBP17.23■□□□□ 0.35
CLN3-232ENST00000568443 DEFA5Q01523 94 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 OR2B11Q5JQS5 317 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 ZNF343Q6P1L6 599 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 MMD2Q8IY49 270 aa17.23■□□□□ 0.35
CLN3-232ENST00000568443 ADAD2Q8NCV1 583 aaKnown RBP17.23■□□□□ 0.35
CLN3-232ENST00000568443 HSD17B10Q99714 261 aaKnown RBP17.23■□□□□ 0.35
CLN3-232ENST00000568443 IGLV2-14P01704 120 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 ARPC4P59998 168 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 KLF5Q13887 457 aaPredicted RBP17.22■□□□□ 0.35
CLN3-232ENST00000568443 OVCH2Q7RTZ1 564 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 BEST4Q8NFU0 473 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 TCTEX1D2Q8WW35 142 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 SLC25A38Q96DW6 304 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 SPIN2AQ99865 258 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 SPIN2BQ9BPZ2 258 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 DIABLOQ9NR28 239 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 SPATA2Q9UM82 520 aa17.22■□□□□ 0.35
CLN3-232ENST00000568443 KMT2CQ8NEZ4 4911 aaKnown RBP17.21■□□□□ 0.35
CLN3-232ENST00000568443 A0A0A6YYH2 397 aa17.21■□□□□ 0.35
CLN3-232ENST00000568443 A6NJ64 397 aa17.21■□□□□ 0.35
CLN3-232ENST00000568443 DYRK1AQ13627 763 aa17.21■□□□□ 0.35
CLN3-232ENST00000568443 TATDN3Q17R31 274 aa17.21■□□□□ 0.35
CLN3-232ENST00000568443 KCTD21Q4G0X4 260 aa17.21■□□□□ 0.35
CLN3-232ENST00000568443 IGLV1-51P01701 117 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 SYNJ2BPP57105 145 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 HAPLN4Q86UW8 402 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 VKORC1L1Q8N0U8 176 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 MFSD4AQ8N468 514 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 GVQW1Q8N7I0 195 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 OR9G4Q8NGQ1 327 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 OR4S2Q8NH73 311 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 TAS2R8Q9NYW2 309 aa17.2■□□□□ 0.34
CLN3-232ENST00000568443 TRIM64CA6NLI5 447 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 RBMXL2O75526 392 aaKnown RBP17.19■□□□□ 0.34
CLN3-232ENST00000568443 RHOGP84095 191 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 ZNF66Q6ZN08 573 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 HOGA1Q86XE5 327 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 SBSPONQ8IVN8 264 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 VSTM2AQ8TAG5 236 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 SNAPC3Q92966 411 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 STAB2Q8WWQ8 2551 aa17.19■□□□□ 0.34
CLN3-232ENST00000568443 FAM223BA6NKX1 122 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 TMEM127O75204 238 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 OR2A4O95047 310 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 TRBV12-3P01733 135 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 PRH1P02810 166 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 FRMD6-AS1P0C7T7 363 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 FCGR2CP31995 323 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 ATP5G2Q06055 141 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 RPEL1Q2QD12 228 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 TIMM50Q3ZCQ8 353 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 C10orf55Q5SWW7 151 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 FAM223AQ8IWN6 122 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 TTC9CQ8N5M4 171 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 SECTM1Q8WVN6 248 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 OR2A7Q96R45 310 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 AUNIPQ9H7T9 357 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 AKIP1Q9NQ31 210 aa17.18■□□□□ 0.34
CLN3-232ENST00000568443 PTHLHP12272 177 aa17.17■□□□□ 0.34
CLN3-232ENST00000568443 EIF4EBP1Q13541 118 aaPredicted RBP17.17■□□□□ 0.34
CLN3-232ENST00000568443 SLC25A42Q86VD7 318 aa17.17■□□□□ 0.34
CLN3-232ENST00000568443 CCL28Q9NRJ3 127 aa17.17■□□□□ 0.34
CLN3-232ENST00000568443 TRBV9A0A0B4J1U6 114 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 KBTBD11O94819 623 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 HRASP01112 189 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 FCER2P06734 321 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 IL34Q6ZMJ4 242 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 CROCCP3Q8IVE0 287 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 OR13F1Q8NGS4 319 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 GPHA2Q96T91 129 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 ADAM30Q9UKF2 790 aa17.16■□□□□ 0.34
CLN3-232ENST00000568443 H0Y980 276 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 TNFSF12O43508 249 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 PPYP01298 95 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 KIR2DS2P43631 304 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 CBX5P45973 191 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 BRWD1-AS2P59051 145 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 ZNF45Q02386 682 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 EXOSC2Q13868 293 aaKnown RBP17.15■□□□□ 0.34
CLN3-232ENST00000568443 MSMO1Q15800 293 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 PUSL1Q8N0Z8 303 aaKnown RBP17.15■□□□□ 0.34
CLN3-232ENST00000568443 NECAP1Q8NC96 275 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 ZBTB34Q8NCN2 500 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 TMEM167AQ8TBQ9 72 aa17.15■□□□□ 0.34
CLN3-232ENST00000568443 S100A16Q96FQ6 103 aaKnown RBP17.15■□□□□ 0.34
CLN3-232ENST00000568443 DPPA5A6NC42 116 aa17.14■□□□□ 0.33
CLN3-232ENST00000568443 HMX3A6NHT5 357 aa17.14■□□□□ 0.33
CLN3-232ENST00000568443 MAS1LP35410 378 aa17.14■□□□□ 0.33
CLN3-232ENST00000568443 RPL27AP46776 148 aaKnown RBP17.14■□□□□ 0.33
CLN3-232ENST00000568443 SSX9Q7RTT3 188 aa17.14■□□□□ 0.33
CLN3-232ENST00000568443 Q8N1Y9 231 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms