RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 ACTL6BO94805 426 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 OR2C1O95371 312 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 HLA-AP01891 365 aaKnown RBP13.18□□□□□ -0.3
CLK3-221ENST00000568139 SAA1P0DJI8 122 aaPredicted RBP13.18□□□□□ -0.3
CLK3-221ENST00000568139 CBLN1P23435 193 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 MRPS15P82914 257 aaKnown RBP13.18□□□□□ -0.3
CLK3-221ENST00000568139 LIPKQ5VXJ0 399 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 SLC25A42Q86VD7 318 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 MMD2Q8IY49 270 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 TMEM203Q969S6 136 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 ST6GALNAC5Q9BVH7 336 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 GGTLC1Q9BX51 225 aa13.18□□□□□ -0.3
CLK3-221ENST00000568139 TMEM272A0A1B0GTI8 110 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 RANBP1P43487 201 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 PLA2G7Q13093 441 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 MED22Q15528 200 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 C10orf55Q5SWW7 151 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 H1FOOQ8IZA3 346 aaPredicted RBP13.17□□□□□ -0.3
CLK3-221ENST00000568139 TMEM61Q8N0U2 210 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 UFD1Q92890 307 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 RAB3CQ96E17 227 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 GINS4Q9BRT9 223 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 RAB22AQ9UL26 194 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 ZNF257Q9Y2Q1 563 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 FRAS1Q86XX4 4008 aa13.17□□□□□ -0.3
CLK3-221ENST00000568139 LOC102724200A0A096LPH7 203 aaPredicted RBP13.16□□□□□ -0.3
CLK3-221ENST00000568139 PTGES3LE9PB15 166 aa13.16□□□□□ -0.3
CLK3-221ENST00000568139 ARL6IP5O75915 188 aa13.16□□□□□ -0.3
CLK3-221ENST00000568139 ZNF57Q68EA5 555 aaPredicted RBP13.16□□□□□ -0.3
CLK3-221ENST00000568139 CACNG8Q8WXS5 425 aa13.16□□□□□ -0.3
CLK3-221ENST00000568139 MAFIPQ8WZ33 124 aa13.16□□□□□ -0.3
CLK3-221ENST00000568139 FBXL7Q9UJT9 491 aa13.16□□□□□ -0.3
CLK3-221ENST00000568139 TMEM213A2RRL7 107 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 NUPR2A6NF83 97 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 HMX3A6NHT5 357 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 NPIPB5A8MRT5 1133 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 TEX22C9J3V5 150 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 MFNGO00587 321 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 RPS25P62851 125 aaKnown RBP13.15□□□□□ -0.3
CLK3-221ENST00000568139 IRF3Q14653 427 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 Q6ZS49 121 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 WFDC3Q8IUB2 231 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 OR52B4Q8NGK2 314 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 CCDC140Q96MF4 163 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 CENPOQ9BU64 300 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 MLXQ9UH92 298 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 SELENOKQ9Y6D0 94 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 V9GY05 133 aa13.15□□□□□ -0.3
CLK3-221ENST00000568139 CXorf65A6NEN9 183 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 A8MWP6 167 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 FCGR3BO75015 233 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 IL6RP08887 468 aaPredicted RBP13.14□□□□□ -0.31
CLK3-221ENST00000568139 GNB3P16520 340 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 ARL3P36405 182 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 MAP2K4P45985 399 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 PMS2P11Q13670 270 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 TRAM1Q15629 374 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 KLK9Q2XQG4 91 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 ANKRD55Q3KP44 614 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 FAM106AQ4KMX7 169 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 OR10R2Q8NGX6 335 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 FANCD2OSQ96PS1 177 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 DCUN1D5Q9BTE7 237 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 OR51E2Q9H255 320 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 KLK9Q9UKQ9 250 aa13.14□□□□□ -0.31
CLK3-221ENST00000568139 E7EUB6 86 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 RAB27BO00194 218 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 NDUFB8O95169 186 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 IGHV3-23P01764 117 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 PSMA1P25786 263 aaKnown RBP13.13□□□□□ -0.31
CLK3-221ENST00000568139 CALRP27797 417 aaKnown RBP13.13□□□□□ -0.31
CLK3-221ENST00000568139 PSMD7P51665 324 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 EWSR1Q01844 656 aaKnown RBP eCLIP13.13□□□□□ -0.313e-7■□□□□ 11.1
CLK3-221ENST00000568139 TNFRSF9Q07011 255 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 CEMP1Q6PRD7 247 aaPredicted RBP13.13□□□□□ -0.31
CLK3-221ENST00000568139 CLEC19AQ6UXS0 136 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 C19orf35Q6ZS72 473 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 ZNF645Q8N7E2 425 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 UXS1Q8NBZ7 420 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 SLC2A9Q9NRM0 540 aa13.13□□□□□ -0.31
CLK3-221ENST00000568139 KMT2AQ03164 3969 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 IGKV1D-8A0A087WSZ0 117 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 A0A0J9YWU9 116 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 A0A1B0GW64 132 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 ERICH4A6NGS2 130 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 SCAF4O95104 1147 aaKnown RBP13.12□□□□□ -0.31
CLK3-221ENST00000568139 CRYGCP07315 174 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 HIST1H1DP16402 221 aaKnown RBP13.12□□□□□ -0.31
CLK3-221ENST00000568139 GADD45AP24522 165 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 TM4SF20Q53R12 229 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 HES5Q5TA89 166 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 OGFRL1Q5TC84 451 aaPredicted RBP13.12□□□□□ -0.31
CLK3-221ENST00000568139 OR4A47Q6IF82 309 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 FYTTD1Q96QD9 318 aaKnown RBP13.12□□□□□ -0.31
CLK3-221ENST00000568139 TP53TG1Q9Y2A0 90 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 PRELID3BQ9Y3B1 194 aa13.12□□□□□ -0.31
CLK3-221ENST00000568139 TRAV25A0A0B4J276 109 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 ZNF320A2RRD8 509 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 KBTBD11O94819 623 aa13.11□□□□□ -0.31
CLK3-221ENST00000568139 ZNF735P0CB33 412 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 236.6 ms