RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SLC29A1Q99808 456 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 UQCC2Q9BRT2 126 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 NICN1Q9BSH3 213 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 HDHD3Q9BSH5 251 aaPredicted RBP5.39□□□□□ -1.55
VPS4A-203ENST00000564399 CSTL1Q9H114 145 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 ZNF430Q9H8G1 570 aaPredicted RBP5.39□□□□□ -1.55
VPS4A-203ENST00000564399 SDHAF2Q9NX18 166 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 MRPL27Q9P0M9 148 aaKnown RBP5.39□□□□□ -1.55
VPS4A-203ENST00000564399 AK3Q9UIJ7 227 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 ZNF257Q9Y2Q1 563 aa5.39□□□□□ -1.55
VPS4A-203ENST00000564399 RBM7Q9Y580 266 aaKnown RBP5.39□□□□□ -1.55
VPS4A-203ENST00000564399 AGRNO00468 2067 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 IGHV3-35A0A0C4DH35 117 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 IGKV1-6A0A0C4DH72 117 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 PNMA8CA0A1B0GUJ8 204 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 OR4C46A6NHA9 309 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 C11orf94C9JXX5 98 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 M0R2N4 97 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 EI24O14681 340 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 TSPAN4O14817 238 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 RTL8CO15255 209 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 S1PR2O95136 353 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 LALBAP00709 142 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 CLEC3BP05452 202 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 C8orf88P0DMB2 117 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 MYOD1P15172 320 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 DCKP27707 260 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 C1orf146Q5VVC0 180 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 UNQ9165/PRO28630Q6UXU0 137 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 CEACAM19Q7Z692 300 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 NR2C2APQ86WQ0 139 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 ZNF575Q86XF7 245 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 CD300LFQ8TDQ1 290 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 SLC7A6OSQ96CW6 309 aaPredicted RBP5.38□□□□□ -1.55
VPS4A-203ENST00000564399 FYTTD1Q96QD9 318 aaKnown RBP5.38□□□□□ -1.55
VPS4A-203ENST00000564399 DCUN1D5Q9BTE7 237 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 C11orf68Q9H3H3 251 aaKnown RBP5.38□□□□□ -1.55
VPS4A-203ENST00000564399 C5orf66Q9H5L9 145 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 Q9N2K0 584 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 FGF20Q9NP95 211 aaPredicted RBP5.38□□□□□ -1.55
VPS4A-203ENST00000564399 MRPS18AQ9NVS2 196 aaKnown RBP5.38□□□□□ -1.55
VPS4A-203ENST00000564399 UFC1Q9Y3C8 167 aa5.38□□□□□ -1.55
VPS4A-203ENST00000564399 VPS13DQ5THJ4 4388 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 TRDCB7Z8K6 153 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 BET1O15155 118 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 DHFRP00374 187 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 CD3GP09693 182 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 SAA1P0DJI8 122 aaPredicted RBP5.37□□□□□ -1.55
VPS4A-203ENST00000564399 DEFA4P12838 97 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 MYL12AP19105 171 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 GALP22466 123 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 SERPINB10P48595 397 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 ELLP55199 621 aaPredicted RBP5.37□□□□□ -1.55
VPS4A-203ENST00000564399 CDK10Q15131 360 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 APRG1Q8IVJ8 170 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 CENPSQ8N2Z9 138 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 SETD9Q8NE22 299 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 OR6M1Q8NGM8 313 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 OSR1Q8TAX0 266 aaPredicted RBP5.37□□□□□ -1.55
VPS4A-203ENST00000564399 ADTRPQ96IZ2 230 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 PGLYRP3Q96LB9 341 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 DERL3Q96Q80 235 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 CMSS1Q9BQ75 279 aaKnown RBP5.37□□□□□ -1.55
VPS4A-203ENST00000564399 TM2D1Q9BX74 207 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 KCNK15Q9H427 330 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 C12orf4Q9NQ89 552 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 PKHD1P08F94 4074 aa5.37□□□□□ -1.55
VPS4A-203ENST00000564399 IGHV4-4A0A075B6R2 117 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 TRBV7-1A0A0A6YYK4 115 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 NPIPB5A8MRT5 1133 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 TEX22C9J3V5 150 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 SOCS1O15524 211 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 IL6RP08887 468 aaPredicted RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 RPA2P15927 270 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 HIST1H1BP16401 226 aaKnown RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 SRMP19623 302 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 MAPK3P27361 379 aaPredicted RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 GPR183P32249 361 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 DUTP33316 252 aaKnown RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 RPL27AP46776 148 aaKnown RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 UNC119Q13432 240 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 SMN1Q16637 294 aaKnown RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 TTC23Q5W5X9 447 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 PLET1Q6UQ28 207 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 POM121L12Q8N7R1 296 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 OR4A4PQ8NGN8 299 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 OR10J5Q8NHC4 309 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 C5orf30Q96GV9 206 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 CXorf58Q96LI9 332 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 FANCD2OSQ96PS1 177 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 URM1Q9BTM9 101 aaKnown RBP5.36□□□□□ -1.55
VPS4A-203ENST00000564399 SLC2A9Q9NRM0 540 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 CLEC2DQ9UHP7 191 aa5.36□□□□□ -1.55
VPS4A-203ENST00000564399 DNAH6Q9C0G6 4158 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 A0A0A6YYD4 124 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 TRAV10A0A0B4J240 114 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 IRGMA1A4Y4 181 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 MFSD2BA6NFX1 497 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 LINC00473A8K010 186 aa5.35□□□□□ -1.55
VPS4A-203ENST00000564399 TMEM14DPA8MWL7 114 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms