RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 VKORC1L1Q8N0U8 176 aa11.03□□□□□ -0.64
CLN3-210ENST00000563874 CISD2Q8N5K1 135 aaKnown RBP11.03□□□□□ -0.64
CLN3-210ENST00000563874 NOL4LQ96MY1 436 aaPredicted RBP11.03□□□□□ -0.64
CLN3-210ENST00000563874 TRAPPC1Q9Y5R8 145 aa11.03□□□□□ -0.64
CLN3-210ENST00000563874 C15orf62A8K5M9 175 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 CLDN14O95500 239 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 CD82P27701 267 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 SRP14P37108 136 aaKnown RBP11.02□□□□□ -0.65
CLN3-210ENST00000563874 EIF4EBP1Q13541 118 aaPredicted RBP11.02□□□□□ -0.65
CLN3-210ENST00000563874 PRAMEF6Q5VXH4 476 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 TEX38Q6PEX7 206 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 C2orf88Q9BSF0 95 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 RBFOX2O43251 390 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLN3-210ENST00000563874 ZNF766Q5HY98 468 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 Q8N7P7 452 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 OR13A1Q8NGR1 328 aa11.02□□□□□ -0.65
CLN3-210ENST00000563874 A0A1W2PPV4 95 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 C17orf112F2Z3M2 114 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 VENTXO95231 258 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 OR9G9P0C7N8 305 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 CD1BP29016 333 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 GCH1P30793 250 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 SGMS2Q8NHU3 365 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 CBLN4Q9NTU7 201 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 ABI3Q9P2A4 366 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 TRBV20OR9-2A0A075B6H5 130 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 GRIFINA4D1Z8 144 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 OOEPA6NGQ2 149 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 EDDM3AQ14507 147 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 GBGT1Q8N5D6 347 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 ZBTB34Q8NCN2 500 aa11.01□□□□□ -0.65
CLN3-210ENST00000563874 CIB3Q96Q77 187 aaPredicted RBP11.01□□□□□ -0.65
CLN3-210ENST00000563874 A0A1W2PNU3 283 aaPredicted RBP11□□□□□ -0.65
CLN3-210ENST00000563874 HSBP1L1C9JCN9 74 aa11□□□□□ -0.65
CLN3-210ENST00000563874 RAB29O14966 203 aa11□□□□□ -0.65
CLN3-210ENST00000563874 MLNRO43193 412 aa11□□□□□ -0.65
CLN3-210ENST00000563874 TYMSP04818 313 aa11□□□□□ -0.65
CLN3-210ENST00000563874 RAB4AP20338 218 aa11□□□□□ -0.65
CLN3-210ENST00000563874 THBS3P49746 956 aa11□□□□□ -0.65
CLN3-210ENST00000563874 UBE2NP61088 152 aaKnown RBP11□□□□□ -0.65
CLN3-210ENST00000563874 FAM122AQ96E09 287 aa11□□□□□ -0.65
CLN3-210ENST00000563874 MRPL37Q9BZE1 423 aaKnown RBP11□□□□□ -0.65
CLN3-210ENST00000563874 IL17BQ9UHF5 180 aa11□□□□□ -0.65
CLN3-210ENST00000563874 SPENQ96T58 3664 aaKnown RBP11□□□□□ -0.65
CLN3-210ENST00000563874 AGFG2O95081 481 aa11□□□□□ -0.65
CLN3-210ENST00000563874 ARL14EPLP0DKL9 152 aa11□□□□□ -0.65
CLN3-210ENST00000563874 VWC2Q2TAL6 325 aa11□□□□□ -0.65
CLN3-210ENST00000563874 RNFT1Q5M7Z0 435 aa11□□□□□ -0.65
CLN3-210ENST00000563874 KLF14Q8TD94 323 aaPredicted RBP11□□□□□ -0.65
CLN3-210ENST00000563874 MSL2Q9HCI7 577 aa11□□□□□ -0.65
CLN3-210ENST00000563874 KMT2EQ8IZD2 1858 aa11□□□□□ -0.65
CLN3-210ENST00000563874 FCGR3BO75015 233 aa11□□□□□ -0.65
CLN3-210ENST00000563874 SP1P08047 785 aa11□□□□□ -0.65
CLN3-210ENST00000563874 RPL15P61313 204 aaKnown RBP11□□□□□ -0.65
CLN3-210ENST00000563874 MRPL49Q13405 166 aaKnown RBP11□□□□□ -0.65
CLN3-210ENST00000563874 IQCJQ1A5X6 159 aa11□□□□□ -0.65
CLN3-210ENST00000563874 R3HDM4Q96D70 268 aa11□□□□□ -0.65
CLN3-210ENST00000563874 FKBP11Q9NYL4 201 aa11□□□□□ -0.65
CLN3-210ENST00000563874 SPRR3Q9UBC9 169 aa11□□□□□ -0.65
CLN3-210ENST00000563874 RRHO14718 337 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 LAMTOR5O43504 91 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 ARG2P78540 354 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 FOXF2Q12947 444 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 ATP1A1-AS1Q5TC04 95 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 MIC13Q5XKP0 118 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 C1orf122Q6ZSJ8 110 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 C11orf53Q8IXP5 236 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 IMMP2LQ96T52 175 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 WDR83OSQ9Y284 106 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 TP53TG5Q9Y2B4 290 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 PDE6DO43924 150 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 SLC35E4Q6ICL7 350 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 SSMEM1Q8WWF3 244 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 SFRP2Q96HF1 295 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 RNF24Q9Y225 148 aa10.99□□□□□ -0.65
CLN3-210ENST00000563874 SCO2A0A1W2PP80 73 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 TDGF1P13385 188 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 IGHV1-2P23083 117 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 LCN2P80188 198 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 TAAR6Q96RI8 345 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 HEYLQ9NQ87 328 aaPredicted RBP10.98□□□□□ -0.65
CLN3-210ENST00000563874 AQP7O14520 342 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 PROP1O75360 226 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 ACP1P24666 158 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 ADMP35318 185 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 FABP6P51161 128 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 TGFBR3Q03167 851 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 PRAMEF5Q5TYX0 476 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 TMEM144Q7Z5S9 345 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 ABHD12Q8N2K0 398 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 GUCD1Q96NT3 240 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 SNHG12Q9BXW3 62 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 HES4Q9HCC6 221 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 PXMP4Q9Y6I8 212 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 TRAV3A0A0B4J244 114 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 IQCF6A8MYZ5 107 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 F6UZH7 168 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 CCKARP32238 428 aa10.98□□□□□ -0.65
CLN3-210ENST00000563874 PDLIM3Q53GG5 364 aaPredicted RBP10.98□□□□□ -0.65
CLN3-210ENST00000563874 TREML4Q6UXN2 200 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms