RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 KIAA1324LA8MWY0 1029 aaPredicted RBP7.3□□□□□ -1.24
VPS39-207ENST00000563692 J3QR06 171 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SLC31A2O15432 143 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 KCNAB3O43448 404 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SYNGR2O43760 224 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SSSCA1O60232 199 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 PROP1O75360 226 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 RBMXL2O75526 392 aaKnown RBP7.3□□□□□ -1.24
VPS39-207ENST00000563692 MMP23AO75900 390 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 S1PR2O95136 353 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SPDEFO95238 335 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 HRASP01112 189 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 LIPFP07098 398 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 FAM157CP0CG43 387 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SAA2P0DJI9 122 aaPredicted RBP7.3□□□□□ -1.24
VPS39-207ENST00000563692 IGHV1-8P0DP01 117 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 NQO2P16083 231 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 G6PCP35575 357 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 CAV2P51636 162 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 TAS2R30P59541 319 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 RTL8BQ17RB0 113 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 CLLU1Q5K131 121 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 FAM71F2Q6NXP2 309 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 BAP18Q8IXM2 172 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 ABHD12Q8N2K0 398 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 OR2C3Q8N628 320 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 DMBX1Q8NFW5 382 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 C8orf46Q8TAG6 207 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 LRRC20Q8TCA0 184 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 R3HDM4Q96D70 268 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 C5orf30Q96GV9 206 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 SLC25A32Q9H2D1 315 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 TMEM133Q9H2Q1 129 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 ZANQ9Y493 2812 aa7.3□□□□□ -1.24
VPS39-207ENST00000563692 LOC105371242A0A075B767 164 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 A0A0G2JRQ6 117 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 MARCH11A6NNE9 402 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 FCN3O75636 299 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 CFDP00746 253 aaPredicted RBP7.29□□□□□ -1.24
VPS39-207ENST00000563692 TGFAP01135 160 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 APOA2P02652 100 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 SRD5A1P18405 259 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 DLX6P56179 175 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 BRWD1-AS2P59051 145 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 ERVFRD-1P60508 538 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 BAXQ07812 192 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 DHRS7BQ6IAN0 325 aaPredicted RBP7.29□□□□□ -1.24
VPS39-207ENST00000563692 Q6ZRM9 215 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 ZNF833PQ6ZTB9 187 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 ODF3L1Q8IXM7 274 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 LY6G5BQ8NDX9 201 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 OR4A16Q8NH70 328 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 STOML3Q8TAV4 291 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 ZNF596Q8TC21 504 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 SMIM8Q96KF7 97 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 CLCC1Q96S66 551 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 SSBP3Q9BWW4 388 aaPredicted RBP7.29□□□□□ -1.24
VPS39-207ENST00000563692 MAGT1Q9H0U3 335 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 LYRM2Q9NU23 88 aaPredicted RBP7.29□□□□□ -1.24
VPS39-207ENST00000563692 WSB1Q9Y6I7 421 aa7.29□□□□□ -1.24
VPS39-207ENST00000563692 FAM24AA6NFZ4 105 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 MSGN1A6NI15 193 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 ATP6V1G1O75348 118 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 SCAF4O95104 1147 aaKnown RBP7.28□□□□□ -1.24
VPS39-207ENST00000563692 GAPDHP04406 335 aaKnown RBP7.28□□□□□ -1.24
VPS39-207ENST00000563692 CT45A6P0DMU7 189 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 CT45A5P0DMU8 189 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 CT45A7P0DMV0 189 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 S100A1P23297 94 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 MC5RP33032 325 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 UBE2KP61086 200 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 RPP30P78346 268 aaKnown RBP7.28□□□□□ -1.24
VPS39-207ENST00000563692 ALKAL2Q6UX46 152 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 C1orf122Q6ZSJ8 110 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 STX12Q86Y82 276 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 PDZD9Q8IXQ8 264 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 SLC7A5P1Q8MH63 180 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 TMEM252Q8N6L7 170 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 LINC01356Q8N9X3 169 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 OR13D1Q8NGV5 346 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 TMEM158Q8WZ71 300 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 DDB2Q92466 427 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 CIB3Q96Q77 187 aaPredicted RBP7.28□□□□□ -1.24
VPS39-207ENST00000563692 ZNF251Q9BRH9 671 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 CYTL1Q9NRR1 136 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 SLC35D1Q9NTN3 355 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 PSENENQ9NZ42 101 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 AMMECR1Q9Y4X0 333 aaPredicted RBP7.28□□□□□ -1.24
VPS39-207ENST00000563692 CR1P17927 2039 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 TANC2Q9HCD6 1990 aa7.28□□□□□ -1.24
VPS39-207ENST00000563692 KIAA2026Q5HYC2 2103 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 B4DSR2 109 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 M0R1W7 72 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 DFFBO76075 338 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 CRYZL1O95825 349 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 P0C879 139 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 SRP14P37108 136 aaKnown RBP7.27□□□□□ -1.25
VPS39-207ENST00000563692 LINC00205P59089 165 aa7.27□□□□□ -1.25
VPS39-207ENST00000563692 EWSR1Q01844 656 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS39-207ENST00000563692 TNFRSF9Q07011 255 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms