RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 VMO1Q7Z5L0 202 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 RHOVQ96L33 236 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 ARPC5LQ9BPX5 153 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 TMEM140Q9NV12 185 aa17.26■□□□□ 0.35
CLN3-209ENST00000561689 APOA2P02652 100 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 ARG1P05089 322 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 CAV2P51636 162 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 OR2B8PP59922 312 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 COMMD7Q86VX2 200 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 KIR3DL3Q8N743 410 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 MARVELD3Q96A59 401 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 PSMG3-AS1Q96PY0 264 aa17.25■□□□□ 0.35
CLN3-209ENST00000561689 FAM24AA6NFZ4 105 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 FOXH1O75593 365 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 SPDEFO95238 335 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 RAB14P61106 215 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 HCP5Q6MZN7 132 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 C1orf122Q6ZSJ8 110 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 SLC51BQ86UW2 128 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 ZNF471Q9BX82 626 aaPredicted RBP17.24■□□□□ 0.35
CLN3-209ENST00000561689 KPTNQ9Y664 436 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 ABCA12Q86UK0 2595 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 TRAV3A0A0B4J244 114 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 A0A1W2PRD5 423 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 A0A1W2PRF3 423 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 A0A1W2PRM7 423 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 SRRM4A7MD48 611 aaKnown RBP17.24■□□□□ 0.35
CLN3-209ENST00000561689 SYNGR2O43760 224 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 IAPPP10997 89 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 PAX9P55771 341 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 TNFRSF9Q07011 255 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 OR2C3Q8N628 320 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 OR11H6Q8NGC7 330 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 BSCL2Q96G97 398 aaPredicted RBP17.24■□□□□ 0.35
CLN3-209ENST00000561689 PCGF1Q9BSM1 259 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 DOPEY2Q9Y3R5 2298 aa17.24■□□□□ 0.35
CLN3-209ENST00000561689 IGHV3-72A0A0B4J1Y9 119 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 GPR137BO60478 399 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 LDLRAD2Q5SZI1 272 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 DHRS7BQ6IAN0 325 aaPredicted RBP17.23■□□□□ 0.35
CLN3-209ENST00000561689 QTRT1Q9BXR0 403 aaKnown RBP17.23■□□□□ 0.35
CLN3-209ENST00000561689 SMIM3Q9BZL3 60 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 SIRPDQ9H106 197 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 HSPB7Q9UBY9 170 aa17.23■□□□□ 0.35
CLN3-209ENST00000561689 H3BP45 60 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 HRASP01112 189 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 UBE2KP61086 200 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 TAGLNQ01995 201 aaKnown RBP17.22■□□□□ 0.35
CLN3-209ENST00000561689 NHLH2Q02577 135 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 CLEC12BQ2HXU8 276 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 OR4A47Q6IF82 309 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 OR4A16Q8NH70 328 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 RBKSQ9H477 322 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 LYRM2Q9NU23 88 aaPredicted RBP17.22■□□□□ 0.35
CLN3-209ENST00000561689 AMMECR1Q9Y4X0 333 aaPredicted RBP17.22■□□□□ 0.35
CLN3-209ENST00000561689 IGSF23A1L1A6 192 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 FAM90A26D6RGX4 464 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 SHOXO15266 292 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 RRASP10301 218 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 SPINK9Q5DT21 86 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 GPR157Q5UAW9 335 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 SCARB1Q8WTV0 552 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 LHX4Q969G2 390 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 RPEQ96AT9 228 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 CXorf58Q96LI9 332 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 RAB40CQ96S21 281 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 CYTL1Q9NRR1 136 aa17.22■□□□□ 0.35
CLN3-209ENST00000561689 LY6LH3BQJ8 138 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 TOX4O94842 621 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 GAPDHP04406 335 aaKnown RBP17.21■□□□□ 0.35
CLN3-209ENST00000561689 NMBP08949 121 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 MMP9P14780 707 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 DSCR9P59020 149 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 TOR2AQ5JU69 321 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 FLYWCH2Q96CP2 140 aaKnown RBP17.21■□□□□ 0.35
CLN3-209ENST00000561689 HARBI1Q96MB7 349 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 UNKLQ9H9P5 680 aaKnown RBP17.21■□□□□ 0.35
CLN3-209ENST00000561689 FBXL17Q9UF56 701 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 WASHC3Q9Y3C0 194 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 INSIG2Q9Y5U4 225 aa17.21■□□□□ 0.35
CLN3-209ENST00000561689 SVEP1Q4LDE5 3571 aa17.21■□□□□ 0.34
CLN3-209ENST00000561689 FAM90A9PA6NNJ1 464 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 RNASEK-C17orf49H0YIS7 233 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 HTR1DP28221 377 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 DVL1P1P54792 670 aaPredicted RBP17.2■□□□□ 0.34
CLN3-209ENST00000561689 RELBQ01201 579 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 EWSR1Q01844 656 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-209ENST00000561689 MOB3BQ86TA1 216 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 PDPNQ86YL7 162 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 TMEM252Q8N6L7 170 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 ST8SIA2Q92186 375 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 IGHV1-3A0A0C4DH29 117 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 ODF3BA8MYP8 253 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 HOXB4P17483 251 aaPredicted RBP17.2■□□□□ 0.34
CLN3-209ENST00000561689 LHFPL4Q7Z7J7 247 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 OSR1Q8TAX0 266 aaPredicted RBP17.2■□□□□ 0.34
CLN3-209ENST00000561689 ZDHHC16Q969W1 377 aa17.2■□□□□ 0.34
CLN3-209ENST00000561689 RPL23AP62750 156 aaKnown RBP17.19■□□□□ 0.34
CLN3-209ENST00000561689 POU2AF1Q16633 256 aa17.19■□□□□ 0.34
CLN3-209ENST00000561689 TMEM177Q53S58 311 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms