RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IFITM3Q01628 133 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 VKORC1L1Q8N0U8 176 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 TMEM230Q96A57 120 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 RNF114Q9Y508 228 aa17.21■□□□□ 0.35
SNX1-210ENST00000560260 IGHV7-81A0A0B4J1V7 117 aa17.21■□□□□ 0.34
SNX1-210ENST00000560260 VDAC2P45880 294 aaPredicted RBP17.21■□□□□ 0.34
SNX1-210ENST00000560260 KRTAP10-3P60369 221 aa17.21■□□□□ 0.34
SNX1-210ENST00000560260 UBE2KP61086 200 aa17.21■□□□□ 0.34
SNX1-210ENST00000560260 SSBP2P81877 361 aaPredicted RBP17.21■□□□□ 0.34
SNX1-210ENST00000560260 ADAD2Q8NCV1 583 aaKnown RBP17.21■□□□□ 0.34
SNX1-210ENST00000560260 CLCC1Q96S66 551 aa17.21■□□□□ 0.34
SNX1-210ENST00000560260 TBC1D24Q9ULP9 559 aa17.21■□□□□ 0.34
SNX1-210ENST00000560260 ANK2Q01484 3957 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 NAP1L6A6NFF2 107 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 UPK1BO75841 260 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 PJVKQ0ZLH3 352 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 TP53RKQ96S44 253 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 C7orf50Q9BRJ6 194 aaKnown RBP17.2■□□□□ 0.34
SNX1-210ENST00000560260 WNT10AQ9GZT5 417 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 COPZ2Q9P299 210 aa17.2■□□□□ 0.34
SNX1-210ENST00000560260 C14orf166Q9Y224 244 aaKnown RBP17.2■□□□□ 0.34
SNX1-210ENST00000560260 PLXNB1O43157 2135 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 HPRT1P00492 218 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 CA2P00918 260 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 IGKV1-39P01597 117 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 IGKV1D-39P04432 117 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 S100GP29377 79 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 LPAR6P43657 344 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 PLGLAQ15195 96 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 VMA21Q3ZAQ7 101 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 LIN54Q6MZP7 749 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 SLC35E3Q7Z769 313 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 CCDC71LQ8N9Z2 235 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 POC5Q8NA72 575 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 WFDC12Q8WWY7 111 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 NOL4LQ96MY1 436 aaPredicted RBP17.19■□□□□ 0.34
SNX1-210ENST00000560260 PLEKHA2Q9HB19 425 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 LINC00527Q9UJ94 153 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 FBXO7Q9Y3I1 522 aa17.19■□□□□ 0.34
SNX1-210ENST00000560260 A0A1B0GUS0 222 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 H0Y980 276 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 LYRM1O43325 122 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 ARSJQ5FYB0 599 aaPredicted RBP17.18■□□□□ 0.34
SNX1-210ENST00000560260 SSX9Q7RTT3 188 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 PUSL1Q8N0Z8 303 aaKnown RBP17.18■□□□□ 0.34
SNX1-210ENST00000560260 KLHDC1Q8N7A1 406 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 CD300LFQ8TDQ1 290 aa17.18■□□□□ 0.34
SNX1-210ENST00000560260 WIPF2Q8TF74 440 aaPredicted RBP17.18■□□□□ 0.34
SNX1-210ENST00000560260 C3orf85A0A1B0GTC6 90 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 CRYM-AS1A6NIL9 109 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 HAX1O00165 279 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 RPA2P15927 270 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 TAS2R31P59538 309 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 CX3CL1P78423 397 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 SRSF4Q08170 494 aaKnown RBP17.17■□□□□ 0.34
SNX1-210ENST00000560260 POU2AF1Q16633 256 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 SP6Q3SY56 376 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 PPP1R27Q86WC6 154 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 TCTEX1D1Q8N7M0 179 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 TEX45Q8NA69 505 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 R3HDM4Q96D70 268 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 RHOVQ96L33 236 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 SLC25A21Q9BQT8 299 aaPredicted RBP17.17■□□□□ 0.34
SNX1-210ENST00000560260 NAA60Q9H7X0 242 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 COMMD9Q9P000 198 aa17.17■□□□□ 0.34
SNX1-210ENST00000560260 STAB1Q9NY15 2570 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 ARPC1BO15143 372 aaKnown RBP17.16■□□□□ 0.34
SNX1-210ENST00000560260 ATP6V0E1O15342 81 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 NDUFB6O95139 128 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 RBMS2Q15434 407 aaKnown RBP17.16■□□□□ 0.34
SNX1-210ENST00000560260 PRSS8Q16651 343 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 C10orf99Q6UWK7 81 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 OR51J1Q9H342 316 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 FAM212BQ9NTI7 297 aaPredicted RBP17.16■□□□□ 0.34
SNX1-210ENST00000560260 FLVCR2Q9UPI3 526 aa17.16■□□□□ 0.34
SNX1-210ENST00000560260 CENPXA8MT69 81 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 KCNAB3O43448 404 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 HRASP01112 189 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 OR5AC1P0C628 307 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 EGR2P11161 476 aaPredicted RBP17.15■□□□□ 0.34
SNX1-210ENST00000560260 NQO2P16083 231 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 SUPT4H1P63272 117 aaKnown RBP17.15■□□□□ 0.34
SNX1-210ENST00000560260 HIST2H2BDQ6DRA6 164 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 OR4A47Q6IF82 309 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 C12orf54Q6X4T0 127 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 TMED4Q7Z7H5 227 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 SCGB3A2Q96PL1 93 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 ZNF430Q9H8G1 570 aaPredicted RBP17.15■□□□□ 0.34
SNX1-210ENST00000560260 PARP11Q9NR21 331 aa17.15■□□□□ 0.34
SNX1-210ENST00000560260 TRAV3A0A0B4J244 114 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 TEX13DA0A0J9YY54 714 aaPredicted RBP17.14■□□□□ 0.33
SNX1-210ENST00000560260 KBTBD11O94819 623 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 OR2A4O95047 310 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 IL6RP08887 468 aaPredicted RBP17.14■□□□□ 0.33
SNX1-210ENST00000560260 UCP1P25874 307 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 G6PCP35575 357 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 ASAH1Q13510 395 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 C10orf55Q5SWW7 151 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 STPG2Q8N412 459 aa17.14■□□□□ 0.33
SNX1-210ENST00000560260 LHFPL5Q8TAF8 219 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms