RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DICER1Q9UPY3 1922 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 DOCK5Q9H7D0 1870 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 MUC21A0A0G2JKD1 596 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 MUC21A0A140T8X8 626 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 A0A1W2PQD3 144 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 GRIFINA4D1Z8 144 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 OR4C45A6NMZ5 311 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 EEF1E1-BLOC1S5C9J1V9 151 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 H3BPC8 53 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 J3QRE1 110 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 LST1O00453 97 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 TXNDC9O14530 226 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 PLA2G10O15496 165 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 GNRH2O43555 120 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 DCTN3O75935 186 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 NSA2O95478 260 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 TCRBP04435 133 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 S100A6P06703 90 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 SERPINA6P08185 405 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 ZNF728P0DKX0 622 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 P0DMU3 169 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FAM231AP0DMU4 169 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FAM231CP0DMU5 169 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FGF6P10767 208 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 DDTP30046 118 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FUSP35637 526 aaKnown RBP eCLIP0.72□□□□□ -2.29
USP3-209ENST00000558925 GABRA2P47869 451 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 MARCKSL1P49006 195 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 ZNF140P52738 457 aaPredicted RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 RBM11P57052 281 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 TAS2R30P59541 319 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 MAGOHP61326 146 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 LSM6P62312 80 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 TBPL1P62380 186 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 RPL30P62888 115 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 HOXC5Q00444 222 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 IFITM2Q01629 132 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 EMX1Q04741 257 aaPredicted RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 AESQ08117 197 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FABP9Q0Z7S8 132 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 OR2F1Q13607 317 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 PMAIP1Q13794 54 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 UAP1Q16222 522 aaPredicted RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 GUK1Q16774 197 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 SYPL2Q5VXT5 272 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 GLT6D1Q7Z4J2 308 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 DEFB125Q8N687 156 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 OR1M1Q8NGA1 313 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 OR5B17Q8NGF7 314 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 OR4C16Q8NGL9 310 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 CLDND2Q8NHS1 167 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 JOSD2Q8TAC2 188 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 LHFPL5Q8TAF8 219 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 ZCCHC13Q8WW36 166 aaKnown RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 ANKRD7Q92527 254 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 SLC35B4Q969S0 331 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 SLC35G5Q96KT7 338 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 CCDC42Q96M95 316 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 ERMAPQ96PL5 475 aaPredicted RBP0.72□□□□□ -2.29
USP3-209ENST00000558925 PPP1R2P1Q96PQ5 205 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 STACQ99469 402 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 MND1Q9BWT6 205 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 UCK1Q9HA47 277 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 GPR84Q9NQS5 396 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 CISHQ9NSE2 258 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 TAAR3PQ9P1P4 343 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 CACNA1GO43497 2377 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FREM1Q5H8C1 2179 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 FN1P02751 2386 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 DHX57Q6P158 1386 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 MAP3K5Q99683 1374 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 MICAL3Q7RTP6 2002 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 DOCK3Q8IZD9 2030 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 CCDC88CQ9P219 2028 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 TRGV4A0A0C4DH28 118 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 A0A0G2JQZ4 141 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 A0A1W2PQL4 384 aaPredicted RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 RFPL4AA6NLU0 287 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 KNCNA6PVL3 124 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 ZNF878C9JN71 531 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 RFPL4AL1F8VTS6 287 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 I3L521 148 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 M0R036 132 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 UBFD1O14562 309 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 NDUFB2O95178 105 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 IFNA16P05015 189 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 BPGMP07738 259 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 FAM228BP0C875 321 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 CCL5P13501 91 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 MYL12AP19105 171 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 PEBP1P30086 187 aaKnown RBP0.71□□□□□ -2.3
USP3-209ENST00000558925 CDKN2CP42773 168 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 SLCO1A2P46721 670 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 XCL1P47992 114 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 PSMD8P48556 350 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 KRTAP12-1P59990 96 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 KRTAP12-3P60328 96 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 SPCS3P61009 180 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 RAB5BP61020 215 aa0.71□□□□□ -2.3
USP3-209ENST00000558925 RANP62826 216 aaKnown RBP0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms