RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 C10orf91Q5T1B1 145 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 ZNF295-AS1Q8N0V1 137 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 SVBPQ8N300 66 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 LILRB2Q8N423 598 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 SPOCK3Q9BQ16 436 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 ZNF251Q9BRH9 671 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 ARFGEF3Q5TH69 2177 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 FAM74A7A6NL05 159 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 COL8A2P25067 703 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 AARDQ4LEZ3 155 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 FAM74A3Q4VXF1 159 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 TMEM155Q4W5P6 130 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 FAM71F2Q6NXP2 309 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 Q6ZRG5 221 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 RAB1CQ92928 201 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 HRH4Q9H3N8 390 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 CARHSP1Q9Y2V2 147 aaKnown RBP13.8□□□□□ -0.2
LDLR-206ENST00000557958 ABCA4P78363 2273 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 METTL15P1P0C7V9 234 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 COL8A1P27658 744 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 CAMLGP49069 296 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 RPP30P78346 268 aaKnown RBP13.8□□□□□ -0.2
LDLR-206ENST00000557958 PJVKQ0ZLH3 352 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 C11orf71Q6IPW1 123 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 DTX2Q86UW9 622 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 IQCF2Q8IXL9 164 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 OR2G3Q8NGZ4 309 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 OR52E5Q8NH55 327 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 SCGB1C1Q8TD33 95 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 NARS2Q96I59 477 aaKnown RBP13.8□□□□□ -0.2
LDLR-206ENST00000557958 MIOXQ9UGB7 285 aa13.8□□□□□ -0.2
LDLR-206ENST00000557958 FCN3O75636 299 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 IFNA17P01571 189 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 APOA2P02652 100 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 ATP6V0CP27449 155 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 SPCS3P61009 180 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 ZNF833PQ6ZTB9 187 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 LINC00311Q8N616 119 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 COMMD1Q8N668 190 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 ZNF383Q8NA42 475 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 OR8B3Q8NGG8 313 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 OR10X1Q8NGY0 326 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 OR8B2Q96RD0 313 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 SH3BGRL3Q9H299 93 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 TMEM140Q9NV12 185 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 USF3Q68DE3 2245 aa13.79□□□□□ -0.2
LDLR-206ENST00000557958 LRBAP50851 2863 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 UTF1Q5T230 341 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 TMEM14EPQ6UXP3 125 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 SSX9Q7RTT3 188 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 TMEM186Q96B77 213 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 PINX1Q96BK5 328 aaKnown RBP13.78□□□□□ -0.2
LDLR-206ENST00000557958 A0A087X0M5 115 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 A0A1B0GX30 115 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 TSPAN15O95858 294 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 OR9G9P0C7N8 305 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 IL3RAP26951 378 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 ZNF616Q08AN1 781 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 ATP6V1FQ16864 119 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 TMEM182Q6ZP80 229 aaPredicted RBP13.78□□□□□ -0.2
LDLR-206ENST00000557958 ZNF429Q86V71 674 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 OR9G1Q8NH87 305 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 ZNF596Q8TC21 504 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 RHOVQ96L33 236 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 PARD6GQ9BYG4 376 aaPredicted RBP13.78□□□□□ -0.2
LDLR-206ENST00000557958 SLC35D1Q9NTN3 355 aa13.78□□□□□ -0.2
LDLR-206ENST00000557958 FLNCQ14315 2725 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 hCG_1809904A0A1W2PP81 198 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 A0A1W2PPE2 198 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 A0A1W2PR64 198 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 A0A1W2PRV1 198 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 RBP4P02753 201 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 ADCYAP1P18509 176 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 DLX6P56179 175 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 SLC38A11Q08AI6 406 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 POU2AF1Q16633 256 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 PDLIM3Q53GG5 364 aaPredicted RBP13.77□□□□□ -0.21
LDLR-206ENST00000557958 BTNL8Q6UX41 500 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 C1orf229Q6ZS94 237 aaPredicted RBP13.77□□□□□ -0.21
LDLR-206ENST00000557958 TNFRSF14Q92956 283 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 NEIL1Q96FI4 390 aaPredicted RBP13.77□□□□□ -0.21
LDLR-206ENST00000557958 QTRT1Q9BXR0 403 aaKnown RBP13.77□□□□□ -0.21
LDLR-206ENST00000557958 HIPK2Q9H2X6 1198 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 FAM208BQ5VWN6 2430 aa13.77□□□□□ -0.21
LDLR-206ENST00000557958 MYO18BQ8IUG5 2567 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 CHD6Q8TD26 2715 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 J3QR06 171 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 OR8U8P0C7N1 319 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 CT45A6P0DMU7 189 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 CT45A5P0DMU8 189 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 CT45A7P0DMV0 189 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 IGHV1-8P0DP01 117 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 OR2B8PP59922 312 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 AKR1C8PQ5T2L2 129 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 DPPA3Q6W0C5 159 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 PUSL1Q8N0Z8 303 aaKnown RBP13.76□□□□□ -0.21
LDLR-206ENST00000557958 ZNF525Q8N782 197 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 OR10P1Q8NGE3 313 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 LYPD6BQ8NI32 183 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 PPIHO43447 177 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms