RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 hCG_38984A0A1B0GV85 526 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 NPIPB11E5RHQ5 1161 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 TRAPPC2LH3BP13 241 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 H3BP45 60 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SIRPB1O00241 398 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 HS3ST1O14792 307 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 TNFSF12O43508 249 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SYNGR3O43761 229 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 NUPR1O60356 82 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 WDR1O75083 606 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF253O75346 499 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 TRAPPC6AO75865 159 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SERF1AO75920 110 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 NDUFB4O95168 129 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CLDN1O95832 211 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CXorf1O96002 111 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 NAPSAO96009 420 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 MT-ND6P03923 174 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 GPX1P07203 203 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV1-13P0DP09 117 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PSG2P11465 335 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CCL5P13501 91 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 BCL3P20749 454 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CRYGSP22914 178 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 WNT5AP41221 380 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PTGDSP41222 190 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CDC34P49427 236 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 LHX2P50458 406 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PRRX1P54821 245 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 DSCR4P56555 118 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 KRTDAPP60985 99 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 GNB1P62873 340 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RBX1P62877 108 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 HTD2P86397 168 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 TRA2AQ13595 282 aaKnown RBP eCLIP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RSPO1Q2MKA7 263 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RPEL1Q2QD12 228 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 MORN2Q502X0 79 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF542PQ5EBM4 170 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 DMRTC1Q5HYR2 192 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PHYHD1Q5SRE7 291 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 DCAF12Q5T6F0 453 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 FAM162BQ5T6X4 162 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 FAM69BQ5VUD6 431 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 STUMQ69YW2 141 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF324BQ6AW86 544 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR8G2PQ6IF36 304 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ACSM6Q6P461 480 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM14EPQ6UXP3 125 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 MOB1BQ7L9L4 216 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RABEPKQ7Z6M1 372 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ANKRD37Q7Z713 158 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 LINC01551Q86U37 167 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 HAPLN4Q86UW8 402 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 LRP11Q86VZ4 500 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 KMT5CQ86Y97 462 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PRSS58Q8IYP2 241 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 GCNT2Q8N0V5 402 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SLC22A18ASQ8N1D0 253 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RPP25LQ8N5L8 163 aaKnown RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF611Q8N823 705 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 FADS6Q8N9I5 356 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 NFAM1Q8NET5 270 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CADM4Q8NFZ8 388 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR4C5Q8NGB2 326 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR1L6Q8NGR2 347 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR51H1Q8NH63 302 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR1L3Q8NH93 324 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 OR2AE1Q8NHA4 323 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 LMX1AQ8TE12 382 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 PSMF1Q92530 271 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RDH5Q92781 318 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 BORCS7Q96B45 105 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 STARD4Q96DR4 205 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 FAM122AQ96E09 287 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 UHRF2Q96PU4 802 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ALKBH7Q9BT30 221 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SF3B5Q9BWJ5 86 aaKnown RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 GNB1LQ9BYB4 327 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 MTIF3Q9H2K0 278 aaKnown RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 SLC25A22Q9H936 323 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 CACNG5Q9UF02 275 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 C19orf25Q9UFG5 118 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 ERRFI1Q9UJM3 462 aaPredicted RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 RBM7Q9Y580 266 aaKnown RBP2.4□□□□□ -2.03
SLIRP-208ENST00000556956 KIAA1549LQ6ZVL6 1849 aa2.4□□□□□ -2.03
SLIRP-208ENST00000556956 COL4A2P08572 1712 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 CCDC88CQ9P219 2028 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 PLXND1Q9Y4D7 1925 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 TRGV10A0A0A0MS01 117 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV2-26A0A0B4J1V2 119 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 LY6G6EA0A0G2JKS1 128 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 A0A1W2PPC4 97 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 GRIFINA4D1Z8 144 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 DPRXA6NFQ7 191 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 SNURFLB1AK76 121 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 H3BMH7 237 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 FCN1O00602 326 aa2.39□□□□□ -2.03
SLIRP-208ENST00000556956 RAB29O14966 203 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms