RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 OR13C8Q8NGS7 320 aa13.78□□□□□ -0.2
SHMT2-225ENST00000556798 MARCH1Q8TCQ1 289 aa13.78□□□□□ -0.2
SHMT2-225ENST00000556798 OR51J1Q9H342 316 aa13.78□□□□□ -0.2
SHMT2-225ENST00000556798 SLC2A9Q9NRM0 540 aa13.78□□□□□ -0.2
SHMT2-225ENST00000556798 PTTG2Q9NZH5 202 aa13.78□□□□□ -0.2
SHMT2-225ENST00000556798 PSMB11A5LHX3 300 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 FBXO24O75426 580 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 UBE2KP61086 200 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 GNB1P62873 340 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 CX3CL1P78423 397 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF57Q68EA5 555 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-225ENST00000556798 TBC1D26Q86UD7 250 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 PPP1R27Q86WC6 154 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 GDPD1Q8N9F7 314 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 POC5Q8NA72 575 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 ABHD5Q8WTS1 349 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 CHPT1Q8WUD6 406 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 HRASLSQ9HDD0 168 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 AKIP1Q9NQ31 210 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 FBXO7Q9Y3I1 522 aa13.77□□□□□ -0.21
SHMT2-225ENST00000556798 RBFOX2O43251 390 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHMT2-225ENST00000556798 S1PR2O95136 353 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 S100GP29377 79 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 PIGPP57054 158 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 AP3S2P59780 193 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF45Q02386 682 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 MRGPRG-AS1Q2M3A8 158 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 TRIQKQ629K1 86 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 SSX9Q7RTT3 188 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 PRRT1Q99946 306 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 FAM103A1Q9BTL3 118 aaKnown RBP13.76□□□□□ -0.21
SHMT2-225ENST00000556798 WSB1Q9Y6I7 421 aa13.76□□□□□ -0.21
SHMT2-225ENST00000556798 G3V318 75 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 F2RP25116 425 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 FAUP35544 74 aaKnown RBP13.75□□□□□ -0.21
SHMT2-225ENST00000556798 SSBP2P81877 361 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-225ENST00000556798 ECSCRQ19T08 205 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 TCTEX1D4Q5JR98 221 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 TEX45Q8NA69 505 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 GRPEL2Q8TAA5 225 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 SLC2A8Q9NY64 477 aa13.75□□□□□ -0.21
SHMT2-225ENST00000556798 LINC00854A0A1B0GVQ3 168 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 ARPC1BO15143 372 aaKnown RBP13.74□□□□□ -0.21
SHMT2-225ENST00000556798 HPRT1P00492 218 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 HRASP01112 189 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 IGF1P05019 195 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 CTSDP07339 412 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-225ENST00000556798 RPA2P15927 270 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 VDAC1P21796 283 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 LPAR6P43657 344 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 INPP1P49441 399 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 RND3P61587 244 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 FXYD3Q14802 87 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 PRSS8Q16651 343 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 OR4X2Q8NGF9 303 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 ZFAND1Q8TCF1 268 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 CD300LFQ8TDQ1 290 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 ARPC1AQ92747 370 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF486Q96H40 463 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-225ENST00000556798 RHOVQ96L33 236 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 CITED2Q99967 270 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF430Q9H8G1 570 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-225ENST00000556798 SCP2D1Q9UJQ7 156 aa13.74□□□□□ -0.21
SHMT2-225ENST00000556798 MPPED1O15442 326 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 CNIH1O95406 144 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 IL7P13232 177 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 ECI1P42126 302 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 TAS2R31P59538 309 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 SLC35B1P78383 322 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 CFHR3Q02985 330 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 TNXAQ16473 311 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF585BQ52M93 769 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF562Q6V9R5 426 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 R3HDM4Q96D70 268 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 C5orf66Q9H5L9 145 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 PLEKHA2Q9HB19 425 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 COPZ2Q9P299 210 aa13.73□□□□□ -0.21
SHMT2-225ENST00000556798 C14orf166Q9Y224 244 aaKnown RBP13.73□□□□□ -0.21
SHMT2-225ENST00000556798 TRAV41A0A0B4J266 112 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 KBTBD11O94819 623 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 OR2A4O95047 310 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 EGR2P11161 476 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-225ENST00000556798 NQO2P16083 231 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 NSUN5P1Q3KNT7 163 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 KHDC1LQ5JSQ8 128 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 C10orf55Q5SWW7 151 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 OR4A47Q6IF82 309 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 LINC00299Q6ZSB3 139 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 LCNL1Q6ZST4 164 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 PUSL1Q8N0Z8 303 aaKnown RBP13.72□□□□□ -0.21
SHMT2-225ENST00000556798 CCDC71LQ8N9Z2 235 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 DMBX1Q8NFW5 382 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 VSTM2AQ8TAG5 236 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 OR2A7Q96R45 310 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 RTBDNQ9BSG5 229 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-225ENST00000556798 COMMD9Q9P000 198 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 ZNF580Q9UK33 172 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 GPR132Q9UNW8 380 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 VSIG4Q9Y279 399 aa13.72□□□□□ -0.21
SHMT2-225ENST00000556798 A0A1W2PRX2 142 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms