RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 EIF4EBP1Q13541 118 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 DYRK1AQ13627 763 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 FHL3Q13643 280 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 PRSS8Q16651 343 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 FOXB2Q5VYV0 432 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 MMD2Q8IY49 270 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 GPX8Q8TED1 209 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 TAS2R8Q9NYW2 309 aa16.07■□□□□ 0.16
CCDC88C-210ENST00000555995 SRRM4A7MD48 611 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 I3L521 148 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 ARPC1BO15143 372 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 RBFOX2O43251 390 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 SOX15O60248 233 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 HPGDSO60760 199 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 HRASP01112 189 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 SAA1P0DJI8 122 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 ELK1P19419 428 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 RCVRNP35243 200 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 RPL30P62888 115 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 TNXAQ16473 311 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 DEFB136Q30KP8 78 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 DHRS11Q6UWP2 260 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 POC5Q8NA72 575 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 OR11H1Q8NG94 326 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 PHB2Q99623 299 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 CCL28Q9NRJ3 127 aa16.06■□□□□ 0.16
CCDC88C-210ENST00000555995 BRI3O95415 125 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 FCER2P06734 321 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 LGALS1P09382 135 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 TMBIM6P55061 237 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 TPPP2P59282 170 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 KIAA0141Q14154 515 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 OR2B11Q5JQS5 317 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 TMEM17Q86X19 198 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 CD300LFQ8TDQ1 290 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 DUX3Q96PT4 197 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 GNB4Q9HAV0 340 aa16.05■□□□□ 0.16
CCDC88C-210ENST00000555995 A0A0G2JLM5 398 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 TRGV3P03979 118 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 RPL5P46777 297 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 PJVKQ0ZLH3 352 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 SNX29P2Q8IUI4 249 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 CLVS1Q8IUQ0 354 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 CMTM1Q8IZ96 169 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 OR1N2Q8NGR9 330 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 OR6F1Q8NGZ6 308 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 SRSF12Q8WXF0 261 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 MOB3AQ96BX8 217 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 SPIN2AQ99865 258 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 SPIN2BQ9BPZ2 258 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 ZNF2Q9BSG1 426 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 ZNF355PQ9NSJ1 428 aa16.04■□□□□ 0.16
CCDC88C-210ENST00000555995 MPPED1O15442 326 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 KBTBD11O94819 623 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 OR2A4O95047 310 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 S100GP29377 79 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 MAS1LP35410 378 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 SSBP2P81877 361 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 C9orf66Q5T8R8 295 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 LPCAT3Q6P1A2 487 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 IDO2Q6ZQW0 420 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 SPAG16Q8N0X2 631 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 RHOVQ96L33 236 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 OR2A7Q96R45 310 aa16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 ZNF430Q9H8G1 570 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-210ENST00000555995 TNFSF12O43508 249 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 PMP2P02689 132 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 HRH1P35367 487 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 RFX2P48378 723 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 TSPAN5P62079 268 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 EGFEM1PQ0D2K5 195 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 ZNF818PQ6ZRF7 136 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 SLC25A42Q86VD7 318 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 OR4A5Q8NH83 315 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 TMEM167AQ8TBQ9 72 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 AURKAIP1Q9NWT8 199 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 RABL2AQ9UBK7 228 aaPredicted RBP16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 EXTL2Q9UBQ6 330 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 RABL2BQ9UNT1 228 aa16.02■□□□□ 0.16
CCDC88C-210ENST00000555995 C13orf42A0A1B0GVH6 325 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 LINC01619G3V211 115 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 HPRT1P00492 218 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 HLA-DMAP28067 261 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 TAS2R31P59538 309 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 DCTN2Q13561 401 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 AADACL3Q5VUY0 350 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 PUSL1Q8N0Z8 303 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 MS4A10Q96PG2 267 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 OR5B12Q96R08 314 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 COA4Q9NYJ1 87 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 COMMD9Q9P000 198 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 CCDC59Q9P031 241 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 DNAH3Q8TD57 4116 aa16.01■□□□□ 0.15
CCDC88C-210ENST00000555995 MSGN1A6NI15 193 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 RGS5O15539 181 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 OR9G9P0C7N8 305 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 NQO2P16083 231 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 TBPP20226 339 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 INSL3P51460 131 aa16■□□□□ 0.15
CCDC88C-210ENST00000555995 MRPS10P82664 201 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms