RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TMEM183AQ8IXX5 376 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 GCSAMQ8N6F7 178 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-222ENST00000555774 GATAD1Q8WUU5 269 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 S1PR3Q99500 378 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 IFI27L2Q9H2X8 130 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 ASCL3Q9NQ33 180 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 DKK4Q9UBT3 224 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 DUSP13Q9UII6 198 aa11.19□□□□□ -0.62
SHMT2-222ENST00000555774 GGCTO75223 188 aaKnown RBP11.18□□□□□ -0.62
SHMT2-222ENST00000555774 IFNA10P01566 189 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 TYMSP04818 313 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 HIST1H1BP16401 226 aaKnown RBP11.18□□□□□ -0.62
SHMT2-222ENST00000555774 LOXL3P58215 753 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 RPS16P62249 146 aaKnown RBP11.18□□□□□ -0.62
SHMT2-222ENST00000555774 GFI1BQ5VTD9 330 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 DOCK7Q96N67 2140 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 A0A1W2PPV4 95 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 PRSS46E5RG02 174 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 GATCO43716 136 aaKnown RBP11.18□□□□□ -0.62
SHMT2-222ENST00000555774 LINC00205P59089 165 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 RELBQ01201 579 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 LTC4SQ16873 150 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 FAM209BQ5JX69 171 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 KCNIP4Q6PIL6 250 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 ZNF383Q8NA42 475 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 OR4S2Q8NH73 311 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 ACY3Q96HD9 319 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 HEYLQ9NQ87 328 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-222ENST00000555774 GFOD1Q9NXC2 390 aa11.18□□□□□ -0.62
SHMT2-222ENST00000555774 LCN2P80188 198 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 C4orf17Q53FE4 359 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 IGF2-ASQ6U949 168 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 Q8TCH9 128 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 DDB2Q92466 427 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 MEGF10Q96KG7 1140 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 IMMP2LQ96T52 175 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 CHODLQ9H9P2 273 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 CALYQ9NYX4 217 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 GALR2O43603 387 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-222ENST00000555774 GFRA3O60609 400 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 CEACAM4O75871 244 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 LHBP01229 141 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 FTH1P19P0C7X4 201 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 FABP4P15090 132 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 SRSF6Q13247 344 aaKnown RBP11.17□□□□□ -0.62
SHMT2-222ENST00000555774 TIMM23BQ5SRD1 257 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 TREML4Q6UXN2 200 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 CISD2Q8N5K1 135 aaKnown RBP11.17□□□□□ -0.62
SHMT2-222ENST00000555774 OR2T10Q8NGZ9 312 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 TMEM170AQ8WVE7 144 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 PACRGQ96M98 296 aaPredicted RBP11.17□□□□□ -0.62
SHMT2-222ENST00000555774 TMEM140Q9NV12 185 aa11.17□□□□□ -0.62
SHMT2-222ENST00000555774 VPS13AQ96RL7 3174 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 FRYLO94915 3013 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 CGB3P0DN86 165 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 CGB7P0DN87 165 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 GLRXP35754 106 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 NECAP1Q8NC96 275 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 OR1P1Q8NH06 330 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 RNASEH2CQ8TDP1 164 aaKnown RBP11.16□□□□□ -0.62
SHMT2-222ENST00000555774 ADTRPQ96IZ2 230 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 OR2V2Q96R30 315 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 HIST1H2BLQ99880 126 aa11.16□□□□□ -0.62
SHMT2-222ENST00000555774 STAG3L2P0CL84 134 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 STAG3L3P0CL85 134 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 NPPCP23582 126 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 GATA4P43694 442 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 THBS3P49746 956 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 KLF3P57682 345 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-222ENST00000555774 MSMPQ1L6U9 139 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 TMEM30BQ3MIR4 351 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 RPL39P5Q59GN2 51 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 PDZD11Q5EBL8 140 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 ACTL10Q5JWF8 245 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 SSX9Q7RTT3 188 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 OR5R1Q8NH85 324 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 FAM222BQ8WU58 562 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 TCF19Q9Y242 345 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 FREM2Q5SZK8 3169 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 CHD3Q12873 2000 aaKnown RBP11.15□□□□□ -0.62
SHMT2-222ENST00000555774 GPR179Q6PRD1 2367 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 C15orf61A6NNL5 157 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 DVL1O14640 695 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 CXorf1O96002 111 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 CRYAAP02489 173 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 PDLIM4P50479 330 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 EDDM3BP56851 147 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 GNB1P62873 340 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 SEM1Q6ZVN7 128 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 LINC01551Q86U37 167 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 MOGAT3Q86VF5 341 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 MGST2Q99735 147 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 GGTLC1Q9BX51 225 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 PRDM13Q9H4Q3 707 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 FOXA2Q9Y261 457 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-222ENST00000555774 PXMP4Q9Y6I8 212 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 KIAA2026Q5HYC2 2103 aa11.15□□□□□ -0.62
SHMT2-222ENST00000555774 IGLV3-9A0A075B6K5 115 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 TRAV38-1A0A0B4J264 116 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms