RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 NKX6-2Q9C056 277 aaPredicted RBP0.61□□□□□ -2.31
SCFD1-216ENST00000555550 METTL9Q9H1A3 318 aa0.61□□□□□ -2.31
SCFD1-216ENST00000555550 CYSTM1Q9H1C7 97 aa0.61□□□□□ -2.31
SCFD1-216ENST00000555550 MAP1LC3AQ9H492 121 aa0.61□□□□□ -2.31
SCFD1-216ENST00000555550 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.61□□□□□ -2.31
SCFD1-216ENST00000555550 PCYT1BQ9Y5K3 369 aaPredicted RBP0.61□□□□□ -2.31
SCFD1-216ENST00000555550 C9orf84Q5VXU9 1444 aa0.61□□□□□ -2.31
SCFD1-216ENST00000555550 COL4A5P29400 1685 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 SIPA1L1O43166 1804 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 DAPL1A0PJW8 107 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 INMT-MINDY4F8WBC2 141 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 GOLGA6L19H0YKK7 550 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 SLC17A3O00476 420 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ZW10O43264 779 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 MT-CO2P00403 227 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 HBZP02008 142 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 TYMSP04818 313 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 IL3P08700 152 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 KRT7P08729 469 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 FBP1P09467 338 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ZNF705DP0CH99 300 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ZNF705BP0CI00 300 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 CYBAP13498 195 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ORM2P19652 201 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 RPL12P30050 165 aaKnown RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 NAA20P61599 178 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 IFITM2Q01629 132 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 PPP1R1AQ13522 171 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 PLPPR5Q32ZL2 321 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 TNFAIP8L3Q5GJ75 292 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 Q6ZTI0 123 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 GLT6D1Q7Z4J2 308 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ATP5L2Q7Z4Y8 100 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 C10orf67Q8IYJ2 551 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 UMODL1-AS1Q8N2C9 162 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 C12orf45Q8N5I9 185 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 OR11H1Q8NG94 326 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 SMCR5Q8TEV8 140 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 OPTNQ96CV9 577 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 EBNA1BP2Q99848 306 aaKnown RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 TMEM208Q9BTX3 173 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 OR51I1Q9H343 314 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 HES4Q9HCC6 221 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 HRASLSQ9HDD0 168 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 SPANXB1Q9NS25 103 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 TAAR3PQ9P1P4 343 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 RBM7Q9Y580 266 aaKnown RBP0.6□□□□□ -2.31
SCFD1-216ENST00000555550 SNX10Q9Y5X0 201 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 ALG5Q9Y673 324 aa0.6□□□□□ -2.31
SCFD1-216ENST00000555550 NUMA1Q14980 2115 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 MICAL3Q7RTP6 2002 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 DCCP43146 1447 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 LINC00862A6NCI5 91 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 B4DEV8 164 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 M0QZ92 97 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 COPEO14579 308 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 NDUFB2O95178 105 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 DEXIO95424 95 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 PSMG1O95456 288 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 ATP6V1G2O95670 118 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 IFNA5P01569 189 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CTXN2P0C2S0 81 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 PET100P0DJ07 73 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 HIST1H1EP10412 219 aaKnown RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 SLC25A16P16260 332 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CFL1P23528 166 aaKnown RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 F8A1P23610 371 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CRHBPP24387 322 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CD24P25063 80 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 RCVRNP35243 200 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 PPP1CCP36873 323 aaKnown RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 SERPINB10P48595 397 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 GABARAPL2P60520 117 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 ERHP84090 104 aaKnown RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 RUNX1Q01196 453 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 EMX1Q04741 257 aaPredicted RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 GNA13Q14344 377 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 RGS21Q2M5E4 152 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CST9Q5W186 159 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 RASL11AQ6T310 242 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 ZBTB8OSQ8IWT0 167 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 DYNAPQ8N1N2 210 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 C9orf163Q8N9P6 203 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 OR2T4Q8NH00 348 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 LHFPL5Q8TAF8 219 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 RAB8BQ92930 207 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 MS4A6EQ96DS6 147 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 CCL13Q99616 98 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 DCUN1D5Q9BTE7 237 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 GLS2Q9UI32 602 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 ANAPC10Q9UM13 185 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 ANGPT4Q9Y264 503 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 HDGFL3Q9Y3E1 203 aa0.59□□□□□ -2.31
SCFD1-216ENST00000555550 V9GYY5 206 aaPredicted RBP0.59□□□□□ -2.31
SCFD1-216ENST00000555550 SMARCA4P51532 1647 aa0.59□□□□□ -2.32
SCFD1-216ENST00000555550 NEO1Q92859 1461 aa0.59□□□□□ -2.32
SCFD1-216ENST00000555550 WRNQ14191 1432 aaPredicted RBP eCLIP0.58□□□□□ -2.32
SCFD1-216ENST00000555550 HECW1Q76N89 1606 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 TRAV8-1A0A0A6YYK1 113 aa0.58□□□□□ -2.32
SCFD1-216ENST00000555550 IGKV3D-7A0A0C4DH55 119 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms