RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 C11orf71Q6IPW1 123 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 HAPLN4Q86UW8 402 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 UBAC2Q8NBM4 344 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 LRRC20Q8TCA0 184 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 LINC00574Q9H8X3 128 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 PSENENQ9NZ42 101 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 OPN1MWP04001 364 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 OPN1MW2P0DN77 364 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 OPN1MW3P0DN78 364 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 UBE2KP61086 200 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 RUNX1Q01196 453 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 TNFRSF9Q07011 255 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 MSMO1Q15800 293 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 SPANXN5Q5MJ07 72 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 THNSL2Q86YJ6 484 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 DDB2Q92466 427 aa10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 QTRT1Q9BXR0 403 aaKnown RBP10.44□□□□□ -0.74
VIPAS39-206ENST00000553888 RAB29O14966 203 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 MED6O75586 246 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 SPCS3P61009 180 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 RNF141Q8WVD5 230 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 S1PR3Q99500 378 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 CBLN4Q9NTU7 201 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 WNK2Q9Y3S1 2297 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 PLXNB1O43157 2135 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 IGHV2-70P01814 119 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 DANCRP0C864 163 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 PPOXP50336 477 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 RAB7AP51149 207 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 SRSF3P84103 164 aaKnown RBP10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 MEF2CQ06413 473 aaPredicted RBP10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 SSX2Q16385 188 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 SLC25A48Q6ZT89 311 aaKnown RBP10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 WFDC12Q8WWY7 111 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 HRH4Q9H3N8 390 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 GAL3ST2Q9H3Q3 398 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 UBTD1Q9HAC8 227 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 TAS2R3Q9NYW6 316 aa10.43□□□□□ -0.74
VIPAS39-206ENST00000553888 EPG5Q9HCE0 2579 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 MYO18BQ8IUG5 2567 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 MYOD1P15172 320 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 HNF4GQ14541 408 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 HEPN1Q6WQI6 88 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 BBC3Q96PG8 261 aaPredicted RBP10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 SLC25A31Q9H0C2 315 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 ARV1Q9H2C2 271 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 KAAG1Q9UBP8 84 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 LPAR3Q9UBY5 353 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 CSMD2Q7Z408 3487 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 BORCS7-ASMTA0A0B4J1R7 106 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 IGKV1-16P04430 117 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 FGF2P09038 288 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 DLX6P56179 175 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 RPL23AP62750 156 aaKnown RBP10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 ZNF841Q6ZN19 808 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 STPG2Q8N412 459 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 FAM216AQ8WUB2 273 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 RAB40CQ96S21 281 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 GINS3Q9BRX5 216 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 HSPB7Q9UBY9 170 aa10.42□□□□□ -0.74
VIPAS39-206ENST00000553888 SERTM2A0A1B0GWG4 89 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 CT45A6P0DMU7 189 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 CT45A5P0DMU8 189 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 CT45A7P0DMV0 189 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 TMEM182Q6ZP80 229 aaPredicted RBP10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 C11orf42Q8N5U0 333 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 TMEM231Q9H6L2 316 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 MED9Q9NWA0 146 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 KLF2Q9Y5W3 355 aaPredicted RBP10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 A0A1B0GV50 99 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 AGPAT2O15120 278 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 PPIHO43447 177 aaKnown RBP10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 HPRT1P00492 218 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 MMP9P14780 707 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 ATP6V0CP27449 155 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 OR8G2PQ6IF36 304 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 OR4C12Q96R67 309 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 MRPL20Q9BYC9 149 aaKnown RBP10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 RAB1BQ9H0U4 201 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 RAB9BQ9NP90 201 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 WSB1Q9Y6I7 421 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 ZFHX3Q15911 3703 aa10.41□□□□□ -0.74
VIPAS39-206ENST00000553888 SPP1P10451 314 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 DAOP14920 347 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 SULT1A2P50226 295 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 TMEM155Q4W5P6 130 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 Q6ZRG5 221 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 TMEM140Q9NV12 185 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 COA4Q9NYJ1 87 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 PRELID3BQ9Y3B1 194 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 ZNF462Q96JM2 2506 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 A8MXK9 166 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 ITGB1BP1O14713 200 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 SULT1A1P50225 295 aa10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 EIF5AP63241 154 aaKnown RBP10.4□□□□□ -0.74
VIPAS39-206ENST00000553888 TCTEX1D1Q8N7M0 179 aa10.4□□□□□ -0.75
VIPAS39-206ENST00000553888 CD300LFQ8TDQ1 290 aa10.4□□□□□ -0.75
VIPAS39-206ENST00000553888 SMIM8Q96KF7 97 aa10.4□□□□□ -0.75
VIPAS39-206ENST00000553888 MAP1AP78559 2803 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms