RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PKDREJQ9NTG1 2253 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 PPIHO43447 177 aaKnown RBP21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 ATP6V1FQ16864 119 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 SLC25A24Q6NUK1 477 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 DTX2Q86UW9 622 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 LILRB2Q8N423 598 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 ZDHHC16Q969W1 377 aa21.54■■□□□ 1.04
CCDC88C-205ENST00000553403 TMEM218A2RU14 115 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 HRASP01112 189 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 TAGLNQ01995 201 aaKnown RBP21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 SLC38A11Q08AI6 406 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 RTL8BQ17RB0 113 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 ZNF841Q6ZN19 808 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 ZNF429Q86V71 674 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 MYO18BQ8IUG5 2567 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 TSPAN15O95858 294 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 IFNA17P01571 189 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 OR2B8PP59922 312 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 ZNF616Q08AN1 781 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 LRRC75BQ2VPJ9 315 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 NARS2Q96I59 477 aaKnown RBP21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 SLC35D1Q9NTN3 355 aa21.53■■□□□ 1.04
CCDC88C-205ENST00000553403 J3QR06 171 aa21.52■■□□□ 1.04
CCDC88C-205ENST00000553403 RUNX1Q01196 453 aa21.52■■□□□ 1.04
CCDC88C-205ENST00000553403 DPPA3Q6W0C5 159 aa21.52■■□□□ 1.04
CCDC88C-205ENST00000553403 VKORC1L1Q8N0U8 176 aa21.52■■□□□ 1.04
CCDC88C-205ENST00000553403 RHOVQ96L33 236 aa21.52■■□□□ 1.04
CCDC88C-205ENST00000553403 YLPM1P49750 1951 aaKnown RBP21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 PMS2P5A8MQ11 134 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 SOD3P08294 240 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 FHITP49789 147 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 THNSL2Q86YJ6 484 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 FAM213BQ8TBF2 198 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 CLCC1Q96S66 551 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 AIFM2Q9BRQ8 373 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 PSMG3Q9BT73 122 aaPredicted RBP21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 NARFLQ9H6Q4 476 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 ZNRD1Q9P1U0 126 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 MIOXQ9UGB7 285 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 RFNGQ9Y644 331 aa21.51■■□□□ 1.03
CCDC88C-205ENST00000553403 IGHV1-8P0DP01 117 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 SRSF3P84103 164 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 AKR1C8PQ5T2L2 129 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 OR9G1Q8NH87 305 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 TMEM186Q96B77 213 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 PINX1Q96BK5 328 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 TREM1Q9NP99 234 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 DIDO1Q9BTC0 2240 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 ANKHD1Q8IWZ3 2542 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 A0A1W2PPH5 198 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 C15orf61A6NNL5 157 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 GNB2P62879 340 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 RPP30P78346 268 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 OR8G2PQ6IF36 304 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 OR4A47Q6IF82 309 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 OR10P1Q8NGE3 313 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 OR10X1Q8NGY0 326 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 RAB1CQ92928 201 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 TIMD4Q96H15 378 aa21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 WDR61Q9GZS3 305 aaKnown RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 FOXA2Q9Y261 457 aaPredicted RBP21.5■■□□□ 1.03
CCDC88C-205ENST00000553403 TRAV3A0A0B4J244 114 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 APOA2P02652 100 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 ARG1P05089 322 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 IL6RP08887 468 aaPredicted RBP21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 SNCAP37840 140 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 ZNF137PP52743 207 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 C11orf42Q8N5U0 333 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 LFNGQ8NES3 379 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 OR8B3Q8NGG8 313 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 OR13D1Q8NGV5 346 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 C8orf46Q8TAG6 207 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 OR8B2Q96RD0 313 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 TMEM147Q9BVK8 224 aa21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 MRPL20Q9BYC9 149 aaKnown RBP21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 UBR5O95071 2799 aaPredicted RBP21.49■■□□□ 1.03
CCDC88C-205ENST00000553403 RNASEK-C17orf49H0YIS7 233 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 CD5P06127 495 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 VDAC2P45880 294 aaPredicted RBP21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 AKR1C1Q04828 323 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 SPINK9Q5DT21 86 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 AVPI1Q5T686 147 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 PUSL1Q8N0Z8 303 aaKnown RBP21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 OR5AN1Q8NGI8 311 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 NEIL1Q96FI4 390 aaPredicted RBP21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 UQCC1Q9NVA1 299 aa21.48■■□□□ 1.03
CCDC88C-205ENST00000553403 SCO1O75880 301 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 APOC3P02656 99 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 RBP4P02753 201 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 DVL1P1P54792 670 aaPredicted RBP21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 TNFRSF14Q92956 283 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 TMEM133Q9H2Q1 129 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 HIPK2Q9H2X6 1198 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 TMEM14BQ9NUH8 114 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 TCF19Q9Y242 345 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 C15orf62A8K5M9 175 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 AGPAT2O15120 278 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 C10orf91Q5T1B1 145 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 ABHD12Q8N2K0 398 aa21.47■■□□□ 1.03
CCDC88C-205ENST00000553403 OSR1Q8TAX0 266 aaPredicted RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms