RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PITPNAQ00169 270 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 NDPQ00604 133 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 LTC4SQ16873 150 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ODF4Q2M2E3 257 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 C5orf64Q2M2E5 130 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 TMEM244Q5VVB8 128 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 RNLSQ5VYX0 342 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 NXNL2Q5VZ03 156 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 TRAT1Q6PIZ9 186 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CD200R1LQ6Q8B3 271 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 SLC25A48Q6ZT89 311 aaKnown RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CLVS1Q8IUQ0 354 aaPredicted RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 HS3ST5Q8IZT8 346 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ARHGAP24Q8N264 748 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 PXT1Q8NFP0 134 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 NPBQ8NG41 125 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 OR2G2Q8NGZ5 317 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 RFT1Q96AA3 541 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 FLYWCH2Q96CP2 140 aaKnown RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 OPALINQ96PE5 141 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CNN2Q99439 309 aaKnown RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 C9orf16Q9BUW7 83 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ANKRD60Q9BZ19 345 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ZNF581Q9P0T4 197 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 DSCAML1Q8TD84 2053 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 KIAA2026Q5HYC2 2103 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 IZUMO1RA6ND01 250 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 OR4C45A6NMZ5 311 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 PRAC2D3DTV9 90 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 H0Y980 276 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 J3QRE1 110 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 MAGEB3O15480 346 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 GATCO43716 136 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 SSX5O60225 188 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 KRT8P05787 483 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 CSN3P07498 182 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 UBCP0CG48 685 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 HSMCR30P0CW71 290 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 SMIM18P0DKX4 95 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 SLC2A2P11168 524 aaPredicted RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 DAPP51397 102 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ACTBP60709 375 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 TSPAN5P62079 268 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 CX3CL1P78423 397 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 EWSR1Q01844 656 aaKnown RBP eCLIP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ZNF85Q03923 595 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 PTGES3Q15185 160 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 MMDQ15546 238 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 KISS1Q15726 138 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 AKIRIN2Q53H80 203 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 PAN3Q58A45 887 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 NHLRC3Q5JS37 347 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 C12orf73Q69YU5 71 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ZNF660Q6AZW8 331 aaPredicted RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 FAHD1Q6P587 224 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 CEMP1Q6PRD7 247 aaPredicted RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ZNF497Q6ZNH5 498 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 DEFB107AQ8IZN7 70 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 GAPTQ8N292 157 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 TCTEX1D1Q8N7M0 179 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 SUMF2Q8NBJ7 301 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 OR51A4Q8NGJ6 313 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 OR5D18Q8NGL1 313 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 OR10AC1Q8NH08 325 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 CASTOR1Q8WTX7 329 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ARL11Q969Q4 196 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ST6GALNAC5Q9BVH7 336 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 C6orf62Q9GZU0 229 aaPredicted RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 TUBA4BQ9H853 241 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 PLEKHA1Q9HB21 404 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 SCRT2Q9NQ03 307 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 ZC4H2Q9NQZ6 224 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 PARP11Q9NR21 331 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 CNOT2Q9NZN8 540 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 EXTL2Q9UBQ6 330 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 WARS2Q9UGM6 360 aaKnown RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 GAB2Q9UQC2 676 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 FOXA2Q9Y261 457 aaPredicted RBP2.64□□□□□ -1.99
LIMA1-206ENST00000550611 GMPPBQ9Y5P6 360 aa2.64□□□□□ -1.99
LIMA1-206ENST00000550611 IGHV3-43A0A0B4J1X8 118 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 TEX13DA0A0J9YY54 714 aaPredicted RBP2.63□□□□□ -1.99
LIMA1-206ENST00000550611 A0A1B0GVG6 124 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 A0A1W2PN81 502 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 TMEM30CPA0ZSE6 113 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 PCP4L1A6NKN8 68 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 HSBP1L1C9JCN9 74 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 ANKRD65E5RJM6 399 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 M0R129 80 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 SDCBPO00560 298 aaPredicted RBP2.63□□□□□ -1.99
LIMA1-206ENST00000550611 NBR2O15453 112 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 SNX3O60493 162 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 CLN5O75503 358 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 IGHV3-11P01762 117 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 CFC1BP0CG36 223 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 CFC1P0CG37 223 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 RBMY1CP0DJD4 496 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 IGHV3-43DP0DP04 118 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 ZP3P21754 424 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 IL3RAP26951 378 aa2.63□□□□□ -1.99
LIMA1-206ENST00000550611 CHRNA7P36544 502 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms