RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SUPT4H1P63272 117 aaKnown RBP16.83■□□□□ 0.28
VPS29-206ENST00000549578 PLGLAQ15195 96 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 NRARPQ7Z6K4 114 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 SGPP2Q8IWX5 399 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 RASL11BQ9BPW5 248 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 PLEKHA2Q9HB19 425 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 NUDT15Q9NV35 164 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 SERPINE2P07093 398 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 SAA1P0DJI8 122 aaPredicted RBP16.82■□□□□ 0.28
VPS29-206ENST00000549578 RPA2P15927 270 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 ANXA7P20073 488 aaKnown RBP16.82■□□□□ 0.28
VPS29-206ENST00000549578 KRTAP24-1Q3LI83 254 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 TMEM128Q5BJH2 165 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 Q6ZSV7 163 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 SSX9Q7RTT3 188 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 SLC25A42Q86VD7 318 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 RHOVQ96L33 236 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 PALMDQ9NP74 551 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 FAM212BQ9NTI7 297 aaPredicted RBP16.82■□□□□ 0.28
VPS29-206ENST00000549578 PRR13Q9NZ81 148 aa16.82■□□□□ 0.28
VPS29-206ENST00000549578 HRASP01112 189 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 IGKV1-39P01597 117 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 IGKV1D-39P04432 117 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 TAS2R31P59538 309 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 UBE2KP61086 200 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 DCTN2Q13561 401 aaKnown RBP16.81■□□□□ 0.28
VPS29-206ENST00000549578 TRIM16LQ309B1 348 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 VMA21Q3ZAQ7 101 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 C9orf152Q5JTZ5 239 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 R3HDM4Q96D70 268 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 CLCC1Q96S66 551 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 ZNF702PQ9H963 129 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 BEX1Q9HBH7 125 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 COMMD9Q9P000 198 aa16.81■□□□□ 0.28
VPS29-206ENST00000549578 CRYGBP07316 175 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 NQO2P16083 231 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 VAMP1P23763 118 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 UCP1P25874 307 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 PPP1R1AQ13522 171 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 GLYATL2Q8WU03 294 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 GALNT14Q96FL9 552 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 PRSS22Q9GZN4 317 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 TMEM222Q9H0R3 208 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 RANBP3Q9H6Z4 567 aaPredicted RBP16.8■□□□□ 0.28
VPS29-206ENST00000549578 KCNIP3Q9Y2W7 256 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 SIGLEC9Q9Y336 463 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 MARCH11A6NNE9 402 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 FCN1O00602 326 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 B3GALNT1O75752 331 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 KRASP01116 189 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 G6PCP35575 357 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 DHODHQ02127 395 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 LIN54Q6MZP7 749 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 HSPB9Q9BQS6 159 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 NUBP2Q9Y5Y2 271 aa16.8■□□□□ 0.28
VPS29-206ENST00000549578 FBN1P35555 2871 aaKnown RBP16.79■□□□□ 0.28
VPS29-206ENST00000549578 TSPAN9O75954 239 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 RAG2P55895 527 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 RIPPLY3P57055 190 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 RAB25P57735 213 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 PJVKQ0ZLH3 352 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 TMEM187Q14656 261 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 TMEM95Q3KNT9 176 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 PPP1R27Q86WC6 154 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 TEX45Q8NA69 505 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 DUSP18Q8NEJ0 188 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 DMBX1Q8NFW5 382 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 LHFPL5Q8TAF8 219 aa16.79■□□□□ 0.28
VPS29-206ENST00000549578 PLXNB1O43157 2135 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 OR2A4O95047 310 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 NDUFA7O95182 113 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 HLA-DRB1P01911 266 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 H2AFB2P0C5Z0 115 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 HKR1P10072 659 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 UBE2MP61081 183 aaKnown RBP16.78■□□□□ 0.28
VPS29-206ENST00000549578 ERVK-16P61578 105 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 POU2AF1Q16633 256 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 MRGPRG-AS1Q2M3A8 158 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 OR4A47Q6IF82 309 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 PUSL1Q8N0Z8 303 aaKnown RBP16.78■□□□□ 0.28
VPS29-206ENST00000549578 OR2A7Q96R45 310 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 AIFM2Q9BRQ8 373 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 TMEM140Q9NV12 185 aa16.78■□□□□ 0.28
VPS29-206ENST00000549578 LINC01548A6NM66 108 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 SFT2D2O95562 160 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 CDS2O95674 445 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 CA2P00918 260 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 OR4E1P0C645 316 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 ANXA3P12429 323 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 SPNP16150 400 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 C4orf46Q504U0 113 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 ARSJQ5FYB0 599 aaPredicted RBP16.77■□□□□ 0.28
VPS29-206ENST00000549578 Q8N2B8 174 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 CASTOR1Q8WTX7 329 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 SEC22AQ96IW7 307 aa16.77■□□□□ 0.28
VPS29-206ENST00000549578 IGHV7-81A0A0B4J1V7 117 aa16.76■□□□□ 0.27
VPS29-206ENST00000549578 KBTBD11O94819 623 aa16.76■□□□□ 0.27
VPS29-206ENST00000549578 HLA-AP01891 365 aaKnown RBP16.76■□□□□ 0.27
VPS29-206ENST00000549578 TMEM268Q5VZI3 342 aa16.76■□□□□ 0.27
VPS29-206ENST00000549578 PLET1Q6UQ28 207 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms