RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 IGHV3-43DP0DP04 118 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 SPP1P10451 314 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OMGP23515 440 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 RAB13P51153 203 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 PRRX1P54821 245 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 F2RL1P55085 397 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 SPCS3P61009 180 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 RPL30P62888 115 aaKnown RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 SERF2P84101 59 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 AANATQ16613 207 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 CT45A1Q5HYN5 189 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 FAM201AQ5SY85 155 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM200BQ69YZ2 307 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 RPL7L1Q6DKI1 246 aaKnown RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 C11orf71Q6IPW1 123 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF833PQ6ZTB9 187 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 TCF23Q7RTU1 214 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 FAM216BQ8N7L0 139 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OR8B3Q8NGG8 313 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OR4A5Q8NH83 315 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OR9G1Q8NH87 305 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 CT45A3Q8NHU0 189 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 VSTM2AQ8TAG5 236 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OSR1Q8TAX0 266 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 UBALD1Q8TB05 177 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 DDB2Q92466 427 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 NEUROG1Q92886 237 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 MARC2Q969Z3 335 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 PINX1Q96BK5 328 aaKnown RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 R3HDM4Q96D70 268 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 NEIL1Q96FI4 390 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 OR8B2Q96RD0 313 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 ATP5SQ99766 215 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 PSMG3Q9BT73 122 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 DCTN5Q9BTE1 182 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 GGACTQ9BVM4 153 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 SMDT1Q9H4I9 107 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 CHODLQ9H9P2 273 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 BARX1Q9HBU1 254 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-239ENST00000545694 MMP26Q9NRE1 261 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 PSENENQ9NZ42 101 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 SAA2-SAA4A0A096LPE2 208 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 A0A0G2JRQ6 117 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 MED19A0JLT2 244 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 FAM24AA6NFZ4 105 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 LINC00473A8K010 186 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF705EA8MWA4 302 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 I3L521 148 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 SHOXO15266 292 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 RAMP3O60896 148 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 FCGR3BO75015 233 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 TSPAN9O75954 239 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 S1PR2O95136 353 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 PLAUP00749 431 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 KRASP01116 189 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 DANCRP0C864 163 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 SAA2P0DJI9 122 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 IGFBP2P18065 325 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZP3P21754 424 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 NFYBP25208 207 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 MC5RP33032 325 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 G6PCP35575 357 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF134P52741 427 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 PAX9P55771 341 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ERVFRD-1P60508 538 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 RAB2AP61019 212 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF816Q0VGE8 651 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 NCR3LG1Q68D85 454 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 TMEM14EPQ6UXP3 125 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 Q6ZRM9 215 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 C1orf122Q6ZSJ8 110 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 PDPNQ86YL7 162 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 CCDC28AQ8IWP9 274 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 LYG1Q8N1E2 194 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 BEND2Q8NDZ0 799 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 OR5C1Q8NGR4 320 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 OR4A16Q8NH70 328 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 LYPD6BQ8NI32 183 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 SCGB1C1Q8TD33 95 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 TMED6Q8WW62 240 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 C5orf30Q96GV9 206 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF251Q9BRH9 671 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 REG4Q9BYZ8 158 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 PRNDQ9UKY0 176 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 ZNF257Q9Y2Q1 563 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 AMMECR1Q9Y4X0 333 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 TIMM9Q9Y5J7 89 aa5.07□□□□□ -1.6
SYNE1-239ENST00000545694 KLF2Q9Y5W3 355 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 TET2Q6N021 2002 aaPredicted RBP5.07□□□□□ -1.6
SYNE1-239ENST00000545694 FLNCQ14315 2725 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 AKAP6Q13023 2319 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 A0A1B0GW64 132 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 IGSF23A1L1A6 192 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 C15orf61A6NNL5 157 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 FNDC10F2Z333 226 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 INS-IGF2F8WCM5 200 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 J3QR06 171 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 M0R1W7 72 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 MPDU1O75352 247 aa5.06□□□□□ -1.6
SYNE1-239ENST00000545694 PROP1O75360 226 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms