RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 SFTA2Q6UW10 78 aa13.22□□□□□ -0.29
CHD4-210ENST00000544040 IGHV1-45A0A0A0MS14 117 aa13.22□□□□□ -0.29
CHD4-210ENST00000544040 ZNF658BQ4V348 819 aaPredicted RBP13.22□□□□□ -0.29
CHD4-210ENST00000544040 NHLRC3Q5JS37 347 aa13.22□□□□□ -0.29
CHD4-210ENST00000544040 CD1AP06126 327 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 RSPO4Q2I0M5 234 aaPredicted RBP13.21□□□□□ -0.29
CHD4-210ENST00000544040 PRSS53Q2L4Q9 553 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 PLSCR2Q9NRY7 297 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 PPIAL4CA0A0B4J2A2 164 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 IGKV3D-20A0A0C4DH25 116 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 PPIAL4GP0DN37 164 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 TRBV9A0A0B4J1U6 114 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 TRAV12-3A0A0B4J271 114 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 FAM214BQ7L5A3 538 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 CDK5RAP2Q96SN8 1893 aa13.21□□□□□ -0.29
CHD4-210ENST00000544040 ATXN7O15265 892 aaPredicted RBP13.21□□□□□ -0.3
CHD4-210ENST00000544040 ICAM4Q14773 271 aa13.21□□□□□ -0.3
CHD4-210ENST00000544040 TRAV24A0A0B4J272 114 aa13.21□□□□□ -0.3
CHD4-210ENST00000544040 PRELID3AQ96N28 172 aa13.21□□□□□ -0.3
CHD4-210ENST00000544040 WBP1LQ9NX94 342 aa13.21□□□□□ -0.3
CHD4-210ENST00000544040 TCF19Q9Y242 345 aa13.21□□□□□ -0.3
CHD4-210ENST00000544040 FAM19A2Q8N3H0 131 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 OR5AN1Q8NGI8 311 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 DNASE2BQ8WZ79 361 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 WDR54Q9H977 334 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 LHFPL6Q9Y693 200 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 LOC101059948A0A1B0GTJ6 334 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 CRYBA2P53672 197 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 ACSF3Q4G176 576 aaPredicted RBP13.2□□□□□ -0.3
CHD4-210ENST00000544040 TOMM7Q9P0U1 55 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 NGFRP08138 427 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 SLC25A47Q6Q0C1 308 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 KCNK17Q96T54 332 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 FAM206AQ9NX38 181 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 TRAV30A0A087WSZ9 112 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 CEACAM4O75871 244 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 NPPCP23582 126 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 OR5A1Q8NGJ0 315 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 DERL1Q9BUN8 251 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 FUT5Q11128 374 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 C2orf68Q2NKX9 166 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 RPL39P5Q59GN2 51 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 WDR82Q6UXN9 313 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 RNASEH2CQ8TDP1 164 aaKnown RBP13.2□□□□□ -0.3
CHD4-210ENST00000544040 SPCS1Q9Y6A9 102 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 PCM1Q15154 2024 aa13.2□□□□□ -0.3
CHD4-210ENST00000544040 IGHV4-39P01824 125 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 STAG3L3P0CL85 134 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 NIT1Q86X76 327 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 CGAP01215 116 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 IL6RP08887 468 aaPredicted RBP13.19□□□□□ -0.3
CHD4-210ENST00000544040 SCGB3A1Q96QR1 104 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 NPFFR1Q9GZQ6 430 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 PIN1P1O15428 100 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 IGLV1-36A0A0B4J1U3 117 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 IGKV1-8A0A0C4DH67 115 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 SCO2A0A1W2PP80 73 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 GCM2O75603 506 aaPredicted RBP13.19□□□□□ -0.3
CHD4-210ENST00000544040 SHISA5Q8N114 240 aa13.19□□□□□ -0.3
CHD4-210ENST00000544040 ALKBH7Q9BT30 221 aaPredicted RBP13.19□□□□□ -0.3
CHD4-210ENST00000544040 TFF3Q07654 80 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 PCSK4Q6UW60 755 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 PNKDQ8N490 385 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 POC1AQ8NBT0 407 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TMEM101Q96IK0 257 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 SMIM8Q96KF7 97 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 DCTN5Q9BTE1 182 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TTC9CQ8N5M4 171 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 EEF1AKMT3Q96AZ1 226 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 LIPFP07098 398 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TNFSF10P50591 281 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 GSN-AS1Q9NRJ2 163 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TNFRSF18Q9Y5U5 241 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 ARID1AO14497 2285 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TRBV5-7A0A0A0MS05 114 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 A0A1W2PQM1 296 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 DRAM1Q8N682 238 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 SRXN1Q9BYN0 137 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 BRWD1Q9NSI6 2320 aa13.18□□□□□ -0.3
CHD4-210ENST00000544040 TSPOP30536 169 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 KLF14Q8TD94 323 aaPredicted RBP13.17□□□□□ -0.3
CHD4-210ENST00000544040 ZNF501Q96CX3 271 aaPredicted RBP13.17□□□□□ -0.3
CHD4-210ENST00000544040 IGHV3OR16-8A0A075B7F1 116 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 FAM90A26D6RGX4 464 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 SNRPD3P62318 126 aaKnown RBP13.17□□□□□ -0.3
CHD4-210ENST00000544040 CYP2G1PQ6ZSU1 146 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 MRPL32Q9BYC8 188 aaKnown RBP13.17□□□□□ -0.3
CHD4-210ENST00000544040 NKX2-8O15522 239 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 CENPVQ7Z7K6 275 aaPredicted RBP13.17□□□□□ -0.3
CHD4-210ENST00000544040 CLDN16Q9Y5I7 305 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 ZNF815PA8K554 130 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 MPTX1A8MV57 137 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 ZNF146Q15072 292 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 Q96M66 194 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 G6PC2Q9NQR9 355 aa13.17□□□□□ -0.3
CHD4-210ENST00000544040 TRBV7-9A0A0J9YWB2 115 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 KLF4O43474 513 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 LINC00614P0C842 121 aa13.16□□□□□ -0.3
CHD4-210ENST00000544040 NPDC1Q9NQX5 325 aaPredicted RBP13.16□□□□□ -0.3
CHD4-210ENST00000544040 NPIPB11E5RHQ5 1161 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms