RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TSNAXQ99598 290 aaKnown RBP11.89□□□□□ -0.51
CLIP1-216ENST00000541410 DFFBO76075 338 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 SOD3P08294 240 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 CT45A6P0DMU7 189 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 CT45A5P0DMU8 189 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 CT45A7P0DMV0 189 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 NQO2P16083 231 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 HBG1P69891 147 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 HBG2P69892 147 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 TMEM14EPQ6UXP3 125 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 SCGB1C1Q8TD33 95 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 EIF5A2Q9GZV4 153 aaKnown RBP11.89□□□□□ -0.51
CLIP1-216ENST00000541410 LINC00574Q9H8X3 128 aa11.89□□□□□ -0.51
CLIP1-216ENST00000541410 A0A1W2PPR1 153 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 SNCAP37840 140 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 TAS2R30P59541 319 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 HEPN1Q6WQI6 88 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 OR4S2Q8NH73 311 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 LYPD6BQ8NI32 183 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 SUN5Q8TC36 379 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 STRAPQ9Y3F4 350 aaKnown RBP11.88□□□□□ -0.51
CLIP1-216ENST00000541410 SVEP1Q4LDE5 3571 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 WNK2Q9Y3S1 2297 aa11.88□□□□□ -0.51
CLIP1-216ENST00000541410 SFTA3P0C7M3 94 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 ELLP55199 621 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-216ENST00000541410 RELBQ01201 579 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 MEF2CQ06413 473 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-216ENST00000541410 AKR1C8PQ5T2L2 129 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 OR4A47Q6IF82 309 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 GNPNAT1Q96EK6 184 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-216ENST00000541410 MRPL20Q9BYC9 149 aaKnown RBP11.87□□□□□ -0.51
CLIP1-216ENST00000541410 ITGB1BP1O14713 200 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 THBS3P49746 956 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 PPT1P50897 306 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 RARRES2Q99969 163 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 HINT2Q9BX68 163 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 CSMD1Q96PZ7 3565 aa11.87□□□□□ -0.51
CLIP1-216ENST00000541410 SRRM4A7MD48 611 aaKnown RBP11.86□□□□□ -0.51
CLIP1-216ENST00000541410 SFTPCP11686 197 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 DAOP14920 347 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 GUK1Q16774 197 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 PUSL1Q8N0Z8 303 aaKnown RBP11.86□□□□□ -0.51
CLIP1-216ENST00000541410 ABHD12Q8N2K0 398 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 SFT2D1Q8WV19 159 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 TMEM204Q9BSN7 226 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 CFAP46Q8IYW2 2715 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 PMS2P5A8MQ11 134 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 H7C2Y5 167 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 RBFOX2O43251 390 aaKnown RBP eCLIP11.86□□□□□ -0.513e-7■■■□□ 15.9
CLIP1-216ENST00000541410 CD5P06127 495 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 RAB5CP51148 216 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 OR10X1Q8NGY0 326 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 SLC35D1Q9NTN3 355 aa11.86□□□□□ -0.51
CLIP1-216ENST00000541410 IGSF10Q6WRI0 2623 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 C15orf62A8K5M9 175 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 NUDT19A8MXV4 375 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 IFNA10P01566 189 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 H2AFB1P0C5Y9 115 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 LRRC75BQ2VPJ9 315 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 AKIRIN2Q53H80 203 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-216ENST00000541410 OR10P1Q8NGE3 313 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 OR13D1Q8NGV5 346 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 WDR61Q9GZS3 305 aaKnown RBP11.85□□□□□ -0.51
CLIP1-216ENST00000541410 HEYLQ9NQ87 328 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-216ENST00000541410 KAAG1Q9UBP8 84 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 GAB2Q9UQC2 676 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 FAM74A7A6NL05 159 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 TRIM77I1YAP6 450 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 C19orf84I3L1E1 186 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 RRHO14718 337 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 TSPAN4O14817 238 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 DVL1P1P54792 670 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-216ENST00000541410 HAGHQ16775 308 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 FAM74A3Q4VXF1 159 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 TMEM88Q6PEY1 159 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 SPSB3Q6PJ21 355 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 SSX7Q7RTT5 188 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 SCRT1Q9BWW7 348 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 RPRMQ9NS64 109 aa11.85□□□□□ -0.51
CLIP1-216ENST00000541410 UMAD1C9J7I0 102 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 DEFA4P12838 97 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 KIR2DS2P43631 304 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 FGF8P55075 233 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 DLX6P56179 175 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 TMEM155Q4W5P6 130 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 C11orf42Q8N5U0 333 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 TAF15Q92804 592 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 NKX6-2Q9C056 277 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 FAM157AC9JC47 383 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 J3QR06 171 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 HMGB3O15347 200 aaKnown RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 PPIHO43447 177 aaKnown RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 NDUFS7O75251 213 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 CDKN1AP38936 164 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 HOXA1P49639 335 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 CIB3Q96Q77 187 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-216ENST00000541410 TCF19Q9Y242 345 aa11.84□□□□□ -0.51
CLIP1-216ENST00000541410 IGHV3-72A0A0B4J1Y9 119 aa11.83□□□□□ -0.52
CLIP1-216ENST00000541410 IGHV2-70P01814 119 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms