RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 IGKV3D-15A0A087WSY6 115 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 IGKV1D-33P01593 117 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 IGKV1-33P01594 117 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 SPANXN1Q5VSR9 72 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 ZNF418Q8TF45 676 aaPredicted RBP11.93□□□□□ -0.5
USP3-204ENST00000540797 LINC00312Q9Y6C7 94 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 MGAMO43451 1857 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 ARHGEF17Q96PE2 2063 aaPredicted RBP11.93□□□□□ -0.5
USP3-204ENST00000540797 PQLC2LA1A4F0 135 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 SLC16A13Q7RTY0 426 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 CLRN3Q8NCR9 226 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 OR52M1Q8NGK5 317 aa11.93□□□□□ -0.5
USP3-204ENST00000540797 FNDC1Q4ZHG4 1894 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 CGB1A6NKQ9 187 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 EFNA2O43921 213 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 SNCGO76070 127 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 TRGV3P03979 118 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 CD74P04233 296 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 OR5AL1P0C617 328 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 RELQ04864 619 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 H1FOOQ8IZA3 346 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 PLSCR4Q9NRQ2 329 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 DOCK4Q8N1I0 1966 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 HIST1H1BP16401 226 aaKnown RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 FBXL15Q9H469 300 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 IGHV3OR16-12A0A075B7B8 117 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 CFDP00746 253 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 NHLH1Q02575 133 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 MDS2Q8NDY4 140 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 OR10C1Q96KK4 312 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 LYRM2Q9NU23 88 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 PTTG1IPP53801 180 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 MRPL54Q6P161 138 aaKnown RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 OR4B1Q8NGF8 309 aa11.92□□□□□ -0.5
USP3-204ENST00000540797 OSR1Q8TAX0 266 aaPredicted RBP11.92□□□□□ -0.5
USP3-204ENST00000540797 TAF15Q92804 592 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP3-204ENST00000540797 LYNX1G3V0Z9 82 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 LYNX1P0DP58 116 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 TMEM187Q14656 261 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 ZIC4Q8N9L1 334 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 TUBD1Q9UJT1 453 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 VWA8A3KMH1 1905 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 AWAT1Q58HT5 328 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 PEAR1Q5VY43 1037 aaPredicted RBP11.91□□□□□ -0.5
USP3-204ENST00000540797 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.91□□□□□ -0.5
USP3-204ENST00000540797 A0A0G2JK05 382 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 NPPCP23582 126 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 DLK1P80370 383 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 RRN3P1Q2M238 152 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 DDB2Q92466 427 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 COX19Q49B96 90 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 DNAJC4Q9NNZ3 241 aa11.91□□□□□ -0.5
USP3-204ENST00000540797 AURKAIP1Q9NWT8 199 aaPredicted RBP11.91□□□□□ -0.5
USP3-204ENST00000540797 IGHV3-35A0A0C4DH35 117 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 TMEM218A2RU14 115 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 NUP37Q8NFH4 326 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 OR2D3Q8NGH3 330 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 DUX5Q96PT3 197 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 ANK1P16157 1881 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 KLHDC1Q8N7A1 406 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 TMEM116Q8NCL8 245 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 WFIKKN1Q96NZ8 548 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 RTTNQ86VV8 2226 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 PGPA6NDG6 321 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 B4DEV8 164 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 RAX2Q96IS3 184 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 IGHV3-48P01763 117 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 NPIPB3Q92617 1050 aa11.9□□□□□ -0.5
USP3-204ENST00000540797 CCL3L1P16619 93 aa11.9□□□□□ -0.51
USP3-204ENST00000540797 MST1P26927 711 aa11.9□□□□□ -0.51
USP3-204ENST00000540797 KIR2DL2P43627 348 aaPredicted RBP11.9□□□□□ -0.51
USP3-204ENST00000540797 PQLC2Q6ZP29 291 aa11.9□□□□□ -0.51
USP3-204ENST00000540797 TP53RKQ96S44 253 aa11.9□□□□□ -0.51
USP3-204ENST00000540797 FOXG1P55316 489 aaPredicted RBP11.89□□□□□ -0.51
USP3-204ENST00000540797 WDR82Q6UXN9 313 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 Q6ZS92 163 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 FGFBP3Q8TAT2 258 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 RPL7P18124 248 aaKnown RBP11.89□□□□□ -0.51
USP3-204ENST00000540797 Q1RN00 199 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 SLC2A8Q9NY64 477 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 SHISA3A0PJX4 238 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 HKR1P10072 659 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 BCL2P10415 239 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 SMIM8Q96KF7 97 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 CLPSP04118 112 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 PRSS1P07477 247 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 C19orf35Q6ZS72 473 aa11.89□□□□□ -0.51
USP3-204ENST00000540797 TEX50A0A1B0GTY4 177 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 TMEM189A5PLL7 270 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 H3BQ15 152 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 RAB9AP51151 201 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 RNF212Q495C1 297 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 MRPL20Q9BYC9 149 aaKnown RBP11.88□□□□□ -0.51
USP3-204ENST00000540797 PROB1E7EW31 1015 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 MOSP00540 346 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 PSG9Q00887 426 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 ST6GALNAC3Q8NDV1 305 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 OR4X2Q8NGF9 303 aa11.88□□□□□ -0.51
USP3-204ENST00000540797 LYZL4Q96KX0 146 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms