RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MFNGO00587 321 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 EFNA2O43921 213 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 PITX3O75364 302 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 SERF2P84101 59 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 ZCCHC24Q8N2G6 241 aaKnown RBP11.99□□□□□ -0.49
COLCA1-204ENST00000540738 SYT8Q8NBV8 401 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 SIGLEC5O15389 551 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 FAM157CP0CG43 387 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 HLA-DRB5Q30154 266 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 OR4B1Q8NGF8 309 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 PXMP4Q9Y6I8 212 aa11.99□□□□□ -0.49
COLCA1-204ENST00000540738 WNT5AP41221 380 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 GAS1P54826 345 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 FGF8P55075 233 aaPredicted RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 RIGQ13278 110 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 MARVELD3Q96A59 401 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 RBM38Q9H0Z9 239 aaKnown RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 PDE6DO43924 150 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 FCGR2BP31994 310 aaPredicted RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 KIAA0141Q14154 515 aaPredicted RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 SLC16A13Q7RTY0 426 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 ESPL1Q14674 2120 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 CLPSP04118 112 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 PRR30Q53SZ7 412 aaPredicted RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 ABCA4P78363 2273 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 DPPA3Q6W0C5 159 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 EAF1Q96JC9 268 aaPredicted RBP11.98□□□□□ -0.49
COLCA1-204ENST00000540738 ZNF586Q9NXT0 402 aa11.98□□□□□ -0.49
COLCA1-204ENST00000540738 PLA2G5P39877 138 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 RPL39P5Q59GN2 51 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 SLC35B3Q9H1N7 401 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 DIDO1Q9BTC0 2240 aaKnown RBP11.97□□□□□ -0.49
COLCA1-204ENST00000540738 A0A0G2JK05 382 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 A0A1B0GTI1 187 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 NBR2O15453 112 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 LINC01356Q8N9X3 169 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 GPR146Q96CH1 333 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 SLC25A38Q96DW6 304 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 TMEM204Q9BSN7 226 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 FBXL7Q9UJT9 491 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 RPL35P42766 123 aaKnown RBP11.97□□□□□ -0.49
COLCA1-204ENST00000540738 TNFRSF9Q07011 255 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 SAMD13Q5VXD3 122 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 NOL4LQ96MY1 436 aaPredicted RBP11.97□□□□□ -0.49
COLCA1-204ENST00000540738 NBASA2RRP1 2371 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 MFSD2BA6NFX1 497 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 TSTD3H0UI37 97 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 WNT2P09544 360 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 COX19Q49B96 90 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 SIGLECL1Q8N7X8 197 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 CCL3L1P16619 93 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 SRD5A1P18405 259 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 B3GALT5-AS1P59052 145 aa11.97□□□□□ -0.49
COLCA1-204ENST00000540738 RANP62826 216 aaKnown RBP11.97□□□□□ -0.49
COLCA1-204ENST00000540738 DOCK8Q8NF50 2099 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 A6NNC1 897 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 HSBP1O75506 76 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 LYPD3O95274 346 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 MYOD1P15172 320 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 DLX6P56179 175 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 WDR73Q6P4I2 378 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 SELENOHQ8IZQ5 122 aaKnown RBP11.96□□□□□ -0.49
COLCA1-204ENST00000540738 VAX2Q9UIW0 290 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 IGHV3OR16-12A0A075B7B8 117 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 MAS1LP35410 378 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 AMTP48728 403 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 PQLC2Q6ZP29 291 aa11.96□□□□□ -0.49
COLCA1-204ENST00000540738 OOSP1A8MZH6 123 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 AP4M1O00189 453 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 DEDDO75618 318 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 CCL1P22362 96 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 C19orf24Q9BVV8 132 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 YPEL1O60688 119 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 ZNF474Q6S9Z5 364 aaPredicted RBP11.96□□□□□ -0.5
COLCA1-204ENST00000540738 MRPL30Q8TCC3 161 aaKnown RBP11.96□□□□□ -0.5
COLCA1-204ENST00000540738 YPEL2Q96QA6 119 aa11.96□□□□□ -0.5
COLCA1-204ENST00000540738 GATA3P23771 443 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM255AQ5JRV8 349 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 FAM216AQ8WUB2 273 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 SPANXN1Q5VSR9 72 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 GBGT1Q8N5D6 347 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 PRSS3P2Q8NHM4 247 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 MRPL20Q9BYC9 149 aaKnown RBP11.95□□□□□ -0.5
COLCA1-204ENST00000540738 FRMPD3Q5JV73 1810 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 TCRBV4S1A1TA0A5B7 111 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 REG1AP05451 166 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 PNRC1Q12796 327 aaPredicted RBP11.95□□□□□ -0.5
COLCA1-204ENST00000540738 ZNF818PQ6ZRF7 136 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 PPP1R3EQ9H7J1 279 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 ZFHX2Q9C0A1 2572 aaPredicted RBP11.95□□□□□ -0.5
COLCA1-204ENST00000540738 ELOA3CA0A087WX78 387 aaPredicted RBP11.95□□□□□ -0.5
COLCA1-204ENST00000540738 RBFOX3A6NFN3 312 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 SRRM5B3KS81 715 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 CLDN34H7C241 214 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 SIAH2O43255 324 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 SEC11BP0C7V7 166 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 TMEM252Q8N6L7 170 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 GTF3AQ92664 365 aaKnown RBP11.95□□□□□ -0.5
COLCA1-204ENST00000540738 C21orf62Q9NYP8 219 aa11.95□□□□□ -0.5
COLCA1-204ENST00000540738 NAT8BQ9UHF3 227 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms