RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PATZ1Q9HBE1 687 aaKnown RBP8.97□□□□□ -0.97
CLIP1-213ENST00000540338 INTS1Q8N201 2190 aaKnown RBP8.97□□□□□ -0.97
CLIP1-213ENST00000540338 PPP5D1E7EU14 171 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CCL21O00585 134 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 RBFOX2O43251 390 aaKnown RBP eCLIP8.97□□□□□ -0.973e-7■■■□□ 15.9
CLIP1-213ENST00000540338 SELLP14151 372 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CEACAM8P31997 349 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-213ENST00000540338 NBL1P41271 181 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 MEF2BQ02080 365 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-213ENST00000540338 C3orf36Q3SXR2 165 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 ABHD12Q8N2K0 398 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 NECAP1Q8NC96 275 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 BTF3L4Q96K17 158 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 GAB2Q9UQC2 676 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 BDP1A6H8Y1 2624 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 GTF3C1Q12789 2109 aa8.97□□□□□ -0.97
CLIP1-213ENST00000540338 CD55P08174 381 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 FAM87AP0C7U9 286 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 BSXQ3C1V8 233 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 TEPPQ6URK8 271 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 ABHD5Q8WTS1 349 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 A0A0G2JNJ9 132 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 A0A1B0GW64 132 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 C9JQL5 133 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 C11orf94C9JXX5 98 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 B2MP61769 119 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 GUSBP1Q15486 140 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 HIST1H2BAQ96A08 127 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 Q9UFV3 132 aa8.96□□□□□ -0.97
CLIP1-213ENST00000540338 LINC00473A8K010 186 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 OR7C2O60412 319 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 S100A8P05109 93 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 RNF212Q495C1 297 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 TMEM14EPQ6UXP3 125 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 TGIF2LYQ8IUE0 185 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 TGIF2LXQ8IUE1 241 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 ACY3Q96HD9 319 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 TNRC6BQ9UPQ9 1833 aaKnown RBP8.96□□□□□ -0.98
CLIP1-213ENST00000540338 MED12LQ86YW9 2145 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 PPP1R2P9O14990 202 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 CFHR2P36980 270 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 REG1BP48304 166 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 FRZBQ92765 325 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 FAM210BQ96KR6 192 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 NPCDR1Q9BY65 106 aa8.96□□□□□ -0.98
CLIP1-213ENST00000540338 PCNX1Q96RV3 2341 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 PRRX1P54821 245 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 ICAM4Q14773 271 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 TBR1Q16650 682 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 C10orf91Q5T1B1 145 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 FAM53AQ6NSI3 398 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-213ENST00000540338 MOB3BQ86TA1 216 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 ZCCHC24Q8N2G6 241 aaKnown RBP8.95□□□□□ -0.98
CLIP1-213ENST00000540338 SNRNP40Q96DI7 357 aaKnown RBP8.95□□□□□ -0.98
CLIP1-213ENST00000540338 TMEM106BQ9NUM4 274 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 NDUFA2O43678 99 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 C12orf57Q99622 126 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 PXMP4Q9Y6I8 212 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 OR9G9P0C7N8 305 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 LINC00205P59089 165 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 MEF2CQ06413 473 aaPredicted RBP8.95□□□□□ -0.98
CLIP1-213ENST00000540338 FABP9Q0Z7S8 132 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 OR1L8Q8NGR8 309 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 MBD3L1Q8WWY6 194 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 CTDSP1Q9GZU7 261 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 LINC00312Q9Y6C7 94 aa8.95□□□□□ -0.98
CLIP1-213ENST00000540338 SAA2-SAA4A0A096LPE2 208 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 TRAV1-1A0A0B4J248 108 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 WNT2P09544 360 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 SAA2P0DJI9 122 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-213ENST00000540338 TFF3Q07654 80 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 ARL16Q0P5N6 197 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 SEM1Q6ZVN7 128 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 NUP37Q8NFH4 326 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 TUBA4BQ9H853 241 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 A0A1W2PN81 502 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 FAM90A9PA6NNJ1 464 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 F6UZH7 168 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 K7EM74 188 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 KBTBD11O94819 623 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 CHRNA7P36544 502 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 GNB2P62879 340 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 OR4A47Q6IF82 309 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 VSIRQ9H7M9 311 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 NCKAP5O14513 1909 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 CLEC12BQ2HXU8 276 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 PFDN5Q99471 154 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 GGACTQ9BVM4 153 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 RAB1BQ9H0U4 201 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 PLA2G2EQ9NZK7 142 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 SLC45A2Q9UMX9 530 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 PRR14LQ5THK1 2151 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 A0A1W2PPQ1 181 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 F2RL2O00254 374 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 GFRA3O60609 400 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 APOBEC3AP31941 199 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-213ENST00000540338 GNB1P62873 340 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 DAZAP2Q15038 168 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-213ENST00000540338 LYPD6BQ8NI32 183 aa8.94□□□□□ -0.98
CLIP1-213ENST00000540338 REV3LO60673 3130 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms