RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	OR10S1	Q8NGN2	331 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	MAL2	Q969L2	176 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	LINC00615	Q96LM1	132 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	SGK494	Q96LW2	274 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	TSSK2	Q96PF2	358 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR4C12	Q96R67	309 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PECR	Q9BY49	303 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PPDPF	Q9H3Y8	114 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PRORY	Q9H606	182 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	SDF2L1	Q9HCN8	221 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	AMBN	Q9NP70	447 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR1A1	Q9P1Q5	309 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	ABT1	Q9ULW3	272 aa	Known RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PXMP4	Q9Y6I8	212 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	SI	P14410	1827 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1B0GUS0	222 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	OR2T8	A6NH00	312 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	PRAC2	D3DTV9	90 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	BUB3	O43684	328 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ANGPTL7	O43827	346 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	TBX6	O95947	436 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	RHOC	P08134	193 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	SPINK8	P0C7L1	97 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	MT3	P25713	68 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	GPR183	P32249	361 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	G6PC	P35575	357 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	HINT1	P49773	126 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	DAP3	P51398	398 aa	Known RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ATP1B3	P54709	279 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	FOXA1	P55317	472 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	MTPN	P58546	118 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	HSPE1	P61604	102 aa	Known RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	IL15RA	Q13261	267 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	MSMO1	Q15800	293 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF77	Q15935	545 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	MRPL23	Q16540	153 aa	Known RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	TBC1D28	Q2M2D7	210 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF718	Q3SXZ3	478 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM211	Q6ICI0	200 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	LEG1	Q6P5S2	330 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	FAM159A	Q6UWV7	190 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	RFLNA	Q6ZTI6	216 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	FOXL2NB	Q6ZUU3	175 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	NR2C2AP	Q86WQ0	139 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	OR2L13	Q8N349	312 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	SPEM1	Q8N4L4	309 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	GCSAM	Q8N6F7	178 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	TEX29	Q8N6K0	151 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF611	Q8N823	705 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	OR6T1	Q8NGN1	323 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	OR4K13	Q8NH42	304 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	C18orf32	Q8TCD1	76 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	GNPNAT1	Q96EK6	184 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	HPDL	Q96IR7	371 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	RASL10B	Q96S79	203 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ATP5S	Q99766	215 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	RNF126	Q9BV68	326 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	COMMD5	Q9GZQ3	224 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	OR2D2	Q9H210	308 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	SH3BGRL3	Q9H299	93 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	RDH14	Q9HBH5	336 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	CMC2	Q9NRP2	79 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	MDFIC	Q9P1T7	246 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	AK3	Q9UIJ7	227 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF443	Q9Y2A4	671 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	YTHDF2	Q9Y5A9	579 aa	Known RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	SOX21	Q9Y651	276 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-231	ENST00000531110	LINC00312	Q9Y6C7	94 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF780B	Q9Y6R6	833 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	SCN1A	P35498	2009 aa		4.61	□□□□□ -1.67
CD44-231	ENST00000531110	BRCA1	P38398	1863 aa	Known RBP	4.6	□□□□□ -1.67
CD44-231	ENST00000531110	TRAV8-6	A0A0B4J262	113 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR4C45	A6NMZ5	311 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	FAM90A26	D6RGX4	464 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110		K7N7A8	449 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SAP18	O00422	153 aa	Known RBP	4.6	□□□□□ -1.67
CD44-231	ENST00000531110	TNFSF11	O14788	317 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	CRX	O43186	299 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-231	ENST00000531110	TBL1X	O60907	577 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	CRLF1	O75462	422 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	EML2	O95834	649 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	NCR2	O95944	276 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	MT-ND6	P03923	174 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	GPX1	P07203	203 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	HLA-DOB	P13765	273 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	LOX	P28300	417 aa	Predicted RBP	4.6	□□□□□ -1.67
CD44-231	ENST00000531110	ASIP	P42127	132 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SYT14P1	Q58G82	188 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SPATA31B1P	Q5VZV4	182 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	PMS2CL	Q68D20	193 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF343	Q6P1L6	599 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	AMTN	Q6UX39	209 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	CYP2G1P	Q6ZSU1	146 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	APCDD1L	Q8NCL9	501 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR13A1	Q8NGR1	328 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR5H2	Q8NGV7	314 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR6K6	Q8NGW6	343 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR2T10	Q8NGZ9	312 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	OR1L1	Q8NH94	360 aa		4.6	□□□□□ -1.67

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