RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 C8orf46Q8TAG6 207 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 ST6GALNAC6Q969X2 333 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 GNPNAT1Q96EK6 184 aaPredicted RBP16.89■□□□□ 0.29
VPS28-209ENST00000528142 NEIL1Q96FI4 390 aaPredicted RBP16.89■□□□□ 0.29
VPS28-209ENST00000528142 TIMD4Q96H15 378 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 RHOVQ96L33 236 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 SLC35D1Q9NTN3 355 aa16.89■□□□□ 0.29
VPS28-209ENST00000528142 UBR5O95071 2799 aaPredicted RBP16.88■□□□□ 0.29
VPS28-209ENST00000528142 PMS2P5A8MQ11 134 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 CEBPZOSA8MTT3 80 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 SPCS3P61009 180 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 PJVKQ0ZLH3 352 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 WDR25Q64LD2 544 aaPredicted RBP16.88■□□□□ 0.29
VPS28-209ENST00000528142 DHRS7BQ6IAN0 325 aaPredicted RBP16.88■□□□□ 0.29
VPS28-209ENST00000528142 FAM71F2Q6NXP2 309 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 IL34Q6ZMJ4 242 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 OR8B3Q8NGG8 313 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 OR2G3Q8NGZ4 309 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 OR9G1Q8NH87 305 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 RBMXL1Q96E39 390 aaKnown RBP16.88■□□□□ 0.29
VPS28-209ENST00000528142 OR8B2Q96RD0 313 aa16.88■□□□□ 0.29
VPS28-209ENST00000528142 MRPL20Q9BYC9 149 aaKnown RBP16.88■□□□□ 0.29
VPS28-209ENST00000528142 YLPM1P49750 1951 aaKnown RBP16.87■□□□□ 0.29
VPS28-209ENST00000528142 PPIHO43447 177 aaKnown RBP16.87■□□□□ 0.29
VPS28-209ENST00000528142 IL6RP08887 468 aaPredicted RBP16.87■□□□□ 0.29
VPS28-209ENST00000528142 ZNF137PP52743 207 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 RTL8BQ17RB0 113 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 SPINK9Q5DT21 86 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 OR4A47Q6IF82 309 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 ZNF429Q86V71 674 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 ABHD12Q8N2K0 398 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 TMEM186Q96B77 213 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 TMEM133Q9H2Q1 129 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 CHODLQ9H9P2 273 aa16.87■□□□□ 0.29
VPS28-209ENST00000528142 STRAPQ9Y3F4 350 aaKnown RBP16.87■□□□□ 0.29
VPS28-209ENST00000528142 HRASP01112 189 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 IFNA5P01569 189 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 IGKV1-16P04430 117 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 FHITP49789 147 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 F2RL1P55085 397 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 RUNX1Q01196 453 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 TUSC1Q2TAM9 212 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 TMEM182Q6ZP80 229 aaPredicted RBP16.86■□□□□ 0.29
VPS28-209ENST00000528142 OR5AN1Q8NGI8 311 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 OR13D1Q8NGV5 346 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 OR10X1Q8NGY0 326 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 MYO18BQ8IUG5 2567 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 A6NNC1 897 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 IFNA17P01571 189 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 LY6G5BQ8NDX9 201 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 BPIFCQ8NFQ6 507 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 UBTD1Q9HAC8 227 aa16.86■□□□□ 0.29
VPS28-209ENST00000528142 PPIAL4CA0A0B4J2A2 164 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 C15orf61A6NNL5 157 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 SRRM4A7MD48 611 aaKnown RBP16.85■□□□□ 0.29
VPS28-209ENST00000528142 H0YJW9 148 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 TRIM77I1YAP6 450 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 LY86O95711 162 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 PPIAL4GP0DN37 164 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 VDAC2P45880 294 aaPredicted RBP16.85■□□□□ 0.29
VPS28-209ENST00000528142 SLC38A11Q08AI6 406 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 DIAPH2-AS1Q14236 149 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 CCDC28AQ8IWP9 274 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 PARD6GQ9BYG4 376 aaPredicted RBP16.85■□□□□ 0.29
VPS28-209ENST00000528142 FOXA2Q9Y261 457 aaPredicted RBP16.85■□□□□ 0.29
VPS28-209ENST00000528142 DOPEY1Q5JWR5 2465 aa16.85■□□□□ 0.29
VPS28-209ENST00000528142 UMAD1C9J7I0 102 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 RBP4P02753 201 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 CDKN1AP38936 164 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 CAMLGP49069 296 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 TAGLNQ01995 201 aaKnown RBP16.84■□□□□ 0.29
VPS28-209ENST00000528142 LRRC75BQ2VPJ9 315 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 OR8G2PQ6IF36 304 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 LILRB2Q8N423 598 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 NABP2Q9BQ15 211 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 TMEM14BQ9NUH8 114 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 LRBAP50851 2863 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 A0A1W2PPH5 198 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 C15orf62A8K5M9 175 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 ARG1P05089 322 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 REG1BP48304 166 aa16.84■□□□□ 0.29
VPS28-209ENST00000528142 SRSF3P84103 164 aaKnown RBP16.84■□□□□ 0.29
VPS28-209ENST00000528142 PATZ1Q9HBE1 687 aaKnown RBP16.84■□□□□ 0.29
VPS28-209ENST00000528142 COL12A1Q99715 3063 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 F12P00748 615 aaPredicted RBP16.83■□□□□ 0.28
VPS28-209ENST00000528142 PRH1P02810 166 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 OR8U8P0C7N1 319 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 GNB2P62879 340 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 THNSL2Q86YJ6 484 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 TNFRSF14Q92956 283 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 NUP50Q9UKX7 468 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 TCF19Q9Y242 345 aa16.83■□□□□ 0.28
VPS28-209ENST00000528142 IGHV2-26A0A0B4J1V2 119 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 C22orf46C9J442 243 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 APOA2P02652 100 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 ATP6V1FQ16864 119 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 OSR1Q8TAX0 266 aaPredicted RBP16.82■□□□□ 0.28
VPS28-209ENST00000528142 SCGB1C1Q8TD33 95 aa16.82■□□□□ 0.28
VPS28-209ENST00000528142 WDR61Q9GZS3 305 aaKnown RBP16.82■□□□□ 0.28
VPS28-209ENST00000528142 UPK2O00526 184 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms