RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 BPIFCQ8NFQ6 507 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 MBD6Q96DN6 1003 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 PSENENQ9NZ42 101 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 HSPB7Q9UBY9 170 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 hCG_1809904A0A1W2PP81 198 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 A0A1W2PPE2 198 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 A0A1W2PR64 198 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 A0A1W2PRV1 198 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 FCGR3BO75015 233 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 RBP4P02753 201 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 SULT1A1P50225 295 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 TNFRSF9Q07011 255 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 ZNF266Q14584 549 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 DOCK11Q5JSL3 2073 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 H2BFWTQ7Z2G1 175 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 TAS2R30P59541 319 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 ERVFRD-1P60508 538 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 BLOC1S1P78537 153 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 CLEC12BQ2HXU8 276 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 PRAMEF5Q5TYX0 476 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 UQCC3Q6UW78 93 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 ZNF251Q9BRH9 671 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 HRH4Q9H3N8 390 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 RBKSQ9H477 322 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 MMP26Q9NRE1 261 aa15.41■□□□□ 0.06
VPS28-207ENST00000526977 C22orf46C9J442 243 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 HPRT1P00492 218 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 SLC25A16P16260 332 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 TMEM267Q0VDI3 215 aaPredicted RBP15.4■□□□□ 0.06
VPS28-207ENST00000526977 BTNL8Q6UX41 500 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 STX12Q86Y82 276 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 R3HDM4Q96D70 268 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 PARP11Q9NR21 331 aa15.4■□□□□ 0.06
VPS28-207ENST00000526977 IGHV4-30-2A0A087WSY4 118 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 MARCH11A6NNE9 402 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 NUDT19A8MXV4 375 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 C11orf42Q8N5U0 333 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.39■□□□□ 0.05
VPS28-207ENST00000526977 DDB2Q92466 427 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 CACFD1Q9UGQ2 172 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 RFNGQ9Y644 331 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 SAA2-SAA4A0A096LPE2 208 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 RBFOX2O43251 390 aaKnown RBP eCLIP15.39■□□□□ 0.054e-8■■■■□ 26.4
VPS28-207ENST00000526977 FOXH1O75593 365 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 SAA2P0DJI9 122 aaPredicted RBP15.39■□□□□ 0.05
VPS28-207ENST00000526977 IGHV1-8P0DP01 117 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 S1PR3Q99500 378 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 PRELID3BQ9Y3B1 194 aa15.39■□□□□ 0.05
VPS28-207ENST00000526977 ZFP36P26651 326 aaKnown RBP15.38■□□□□ 0.05
VPS28-207ENST00000526977 ATP6V0CP27449 155 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 GNG10P50151 68 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 ARL16Q0P5N6 197 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 PJVKQ0ZLH3 352 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 Q6ZRG5 221 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 LYG1Q8N1E2 194 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 ATP5SQ99766 215 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 A0A087X0M5 115 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 IGHV4-61A0A0C4DH41 118 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 A0A1B0GX30 115 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 ENSAO43768 121 aaKnown RBP15.38■□□□□ 0.05
VPS28-207ENST00000526977 METTL15P1P0C7V9 234 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 SRSF3P84103 164 aaKnown RBP15.38■□□□□ 0.05
VPS28-207ENST00000526977 SPANXN5Q5MJ07 72 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 IL34Q6ZMJ4 242 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 SLC25A48Q6ZT89 311 aaKnown RBP15.38■□□□□ 0.05
VPS28-207ENST00000526977 HAPLN4Q86UW8 402 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 LYPD6BQ8NI32 183 aa15.38■□□□□ 0.05
VPS28-207ENST00000526977 M0R1W7 72 aa15.37■□□□□ 0.05
VPS28-207ENST00000526977 C1orf122Q6ZSJ8 110 aa15.37■□□□□ 0.05
VPS28-207ENST00000526977 C8orf31Q8N9H6 132 aa15.37■□□□□ 0.05
VPS28-207ENST00000526977 TSNAXQ99598 290 aaKnown RBP15.37■□□□□ 0.05
VPS28-207ENST00000526977 POLR3KQ9Y2Y1 108 aaPredicted RBP15.37■□□□□ 0.05
VPS28-207ENST00000526977 FASNP49327 2511 aaKnown RBP15.37■□□□□ 0.05
VPS28-207ENST00000526977 OR9G9P0C7N8 305 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 KIR2DS2P43631 304 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 FHITP49789 147 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 RAB5CP51148 216 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 AKR1C1Q04828 323 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 PRSS57Q6UWY2 283 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 MS4A7Q9GZW8 240 aaPredicted RBP15.36■□□□□ 0.05
VPS28-207ENST00000526977 ONECUT1Q9UBC0 465 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 DFFBO76075 338 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 F2RL1P55085 397 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 LCN2P80188 198 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 KIR3DL3Q8N743 410 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 ZNF383Q8NA42 475 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 OR2G3Q8NGZ4 309 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 NARS2Q96I59 477 aaKnown RBP15.36■□□□□ 0.05
VPS28-207ENST00000526977 TMEM133Q9H2Q1 129 aa15.36■□□□□ 0.05
VPS28-207ENST00000526977 YLPM1P49750 1951 aaKnown RBP15.36■□□□□ 0.05
VPS28-207ENST00000526977 ABCA12Q86UK0 2595 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 TMEM218A2RU14 115 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 APOC3P02656 99 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 M6PRP20645 277 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 USF1P22415 310 aaPredicted RBP15.35■□□□□ 0.05
VPS28-207ENST00000526977 THBS3P49746 956 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 PAX2Q02962 417 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 TMEM14EPQ6UXP3 125 aa15.35■□□□□ 0.05
VPS28-207ENST00000526977 TMEM182Q6ZP80 229 aaPredicted RBP15.35■□□□□ 0.05
VPS28-207ENST00000526977 SSX9Q7RTT3 188 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms