RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ANXA3P12429 323 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 LGALS7P47929 136 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 RAG2P55895 527 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 TRIM16LQ309B1 348 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 LYG2Q86SG7 212 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 TSNAXQ99598 290 aaKnown RBP12.97□□□□□ -0.33
LSM1-204ENST00000522515 SEC22CQ9BRL7 303 aa12.97□□□□□ -0.33
LSM1-204ENST00000522515 CLDN34H7C241 214 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 NBR2O15453 112 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 TCF21O43680 179 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 KRASP01116 189 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 RPA2P15927 270 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 PSG5Q15238 335 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 ANKRD55Q3KP44 614 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 LIAT1Q6ZQX7 453 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 SSX9Q7RTT3 188 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 NPBQ8NG41 125 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 OR8H1Q8NGG4 311 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 CHPT1Q8WUD6 406 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 R3HDM4Q96D70 268 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 RHOVQ96L33 236 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 TMEM56Q96MV1 263 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 COMMD9Q9P000 198 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 TMEM56-RWDD3S4R434 201 aa12.96□□□□□ -0.33
LSM1-204ENST00000522515 SLC25A17O43808 307 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 GPR137BO60478 399 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 NDUFA3O95167 84 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 HRASP01112 189 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 IL5P05113 134 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 NQO2P16083 231 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 G6PCP35575 357 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 UBA52P62987 128 aaKnown RBP12.95□□□□□ -0.34
LSM1-204ENST00000522515 TMEM268Q5VZI3 342 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 SELENOHQ8IZQ5 122 aaKnown RBP12.95□□□□□ -0.34
LSM1-204ENST00000522515 Q8N9W7 124 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 SEC22AQ96IW7 307 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 JMJD8Q96S16 334 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 FBXL15Q9H469 300 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 MOB4Q9Y3A3 225 aa12.95□□□□□ -0.34
LSM1-204ENST00000522515 A0A0A6YYJ9 748 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 MARCH11A6NNE9 402 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 RRHO14718 337 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 SPDEFO95238 335 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 DUS4LO95620 317 aaKnown RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 DHFRP00374 187 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 AMY1AP04745 511 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 RNASE1P07998 156 aaKnown RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 SAA1P0DJI8 122 aaPredicted RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 UBE2KP61086 200 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 POU2AF1Q16633 256 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 C16orf82Q7Z2V1 217 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 ZNF695Q8IW36 515 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 FAM71E2Q8N5Q1 922 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 C5orf56Q8N8D9 126 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 DMBX1Q8NFW5 382 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 RBPMSQ93062 196 aaKnown RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 TPSG1Q9NRR2 321 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 C1RLQ9NZP8 487 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 KIAA1456Q9P272 454 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 METTL1Q9UBP6 276 aaKnown RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 A0A0B4J293 547 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 IGKV1-5P01602 117 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 CRYGBP07316 175 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 SRSF2Q01130 221 aaKnown RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 VMA21Q3ZAQ7 101 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 OR4A47Q6IF82 309 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 LIN54Q6MZP7 749 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 LGI3Q8N145 548 aa12.94□□□□□ -0.34
LSM1-204ENST00000522515 ZNF431Q8TF32 576 aaPredicted RBP12.94□□□□□ -0.34
LSM1-204ENST00000522515 FAM181BA6NEQ2 426 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 SH2D7A6NKC9 451 aaPredicted RBP12.93□□□□□ -0.34
LSM1-204ENST00000522515 FGF16O43320 207 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 PRAF2O60831 178 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 ERVK-16P61578 105 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 SRPXP78539 464 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 PLGLAQ15195 96 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 C5orf64Q2M2E5 130 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 LYZL2Q7Z4W2 148 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 PUSL1Q8N0Z8 303 aaKnown RBP12.93□□□□□ -0.34
LSM1-204ENST00000522515 SLC35G3Q8N808 338 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 TEX45Q8NA69 505 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 MINDY2Q8NBR6 621 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 MITD1Q8WV92 249 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 IL22RA2Q969J5 263 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 AIFM2Q9BRQ8 373 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 RAB18Q9NP72 206 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 TMEM140Q9NV12 185 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 SIGLEC9Q9Y336 463 aa12.93□□□□□ -0.34
LSM1-204ENST00000522515 A0A0G2JRQ6 117 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 FCN1O00602 326 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 OR2A4O95047 310 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 AKR1C2P52895 323 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 BLCAPP62952 87 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 TATDN3Q17R31 274 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 MRGPRG-AS1Q2M3A8 158 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 LURAP1LQ8IV03 231 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 LRTM2Q8N967 370 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 COQ8AQ8NI60 647 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 OR2A7Q96R45 310 aa12.92□□□□□ -0.34
LSM1-204ENST00000522515 CLCC1Q96S66 551 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms