RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ADTRPQ96IZ2 230 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 PKIBQ9C010 78 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 KLF2Q9Y5W3 355 aaPredicted RBP9.94□□□□□ -0.82
SYNPO-204ENST00000519664 RFNGQ9Y644 331 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A10PA6NDY2 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A18PA6NE21 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A16PA6NEW6 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A20PA6NIJ5 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A8PA6NJQ4 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A7PA6NKC0 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF716A6NP11 495 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A22PA8MWA6 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A12PA8MX19 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A5PA8MXJ8 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A23PA8MXZ1 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 F8VVB4 439 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 F8VWA3 439 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 RAB29O14966 203 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A15PP0C7V4 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A13PP0C7W8 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A14PP0C7W9 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 FAM90A24PP0C7X0 464 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 RELQ04864 619 aaPredicted RBP9.94□□□□□ -0.82
SYNPO-204ENST00000519664 P2RY6Q15077 328 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 RPL39P5Q59GN2 51 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 SLC24A4Q8NFF2 622 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 GALNT14Q96FL9 552 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 HPRT1P00492 218 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 SUPT4H1P63272 117 aaKnown RBP9.94□□□□□ -0.82
SYNPO-204ENST00000519664 PET117Q6UWS5 81 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 TECRQ9NZ01 308 aaKnown RBP9.94□□□□□ -0.82
SYNPO-204ENST00000519664 OR51B2Q9Y5P1 312 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 DENND4CQ5VZ89 1909 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 ARFGEF3Q5TH69 2177 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF645Q8N7E2 425 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 C2orf88Q9BSF0 95 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 LOC102723996A0A087X1L8 192 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 SRSF10O75494 262 aaKnown RBP9.93□□□□□ -0.82
SYNPO-204ENST00000519664 UCP3P55916 312 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 FAM27E3Q08E93 113 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 RTP5Q14D33 572 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 C14orf144Q96I85 54 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 C1QTNF5Q9BXJ0 243 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 PARD6GQ9BYG4 376 aaPredicted RBP9.93□□□□□ -0.82
SYNPO-204ENST00000519664 NPVFQ9HCQ7 196 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 IGKV1-27A0A075B6S5 117 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 SNURFLB1AK76 121 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 CECR9P0C854 216 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 NUTF2P61970 127 aaKnown RBP9.93□□□□□ -0.82
SYNPO-204ENST00000519664 FAM166AQ6J272 317 aa9.93□□□□□ -0.82
SYNPO-204ENST00000519664 ZCCHC24Q8N2G6 241 aaKnown RBP9.93□□□□□ -0.82
SYNPO-204ENST00000519664 SEBOXQ9HB31 216 aaPredicted RBP9.93□□□□□ -0.82
SYNPO-204ENST00000519664 IGKV3-7A0A075B6H7 116 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 E9PQ18 207 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 H3BTX0 84 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 ATXN7O15265 892 aaPredicted RBP9.92□□□□□ -0.82
SYNPO-204ENST00000519664 AGAP20933 346 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 FAM89BQ8N5H3 189 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 CALYQ9NYX4 217 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PPIAL4EA0A075B759 164 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF785A8K8V0 405 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 C17orf98A8MV24 154 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PPIAL4DF5H284 164 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PPIAL4FP0DN26 164 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 FCER1GP30273 86 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PTGDSP41222 190 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 OR5R1Q8NH85 324 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 FAM131CQ96AQ9 280 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 RCC1LQ96I51 464 aaKnown RBP9.92□□□□□ -0.82
SYNPO-204ENST00000519664 TMEM140Q9NV12 185 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PPIAL4AQ9Y536 164 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 LRRC3CA6NJW4 275 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 NEURL1O76050 574 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 IGHV2-70P01814 119 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 ACP1P24666 158 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 LHX2P50458 406 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 TMEM183AQ8IXX5 376 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 OR5AU1Q8NGC0 362 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 PRNDQ9UKY0 176 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 MYO18BQ8IUG5 2567 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 AHRRA9YTQ3 701 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 E9PLN8 166 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 COX5BP10606 129 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 KIR2DS2P43631 304 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 ZFP36L1Q07352 338 aaKnown RBP9.92□□□□□ -0.82
SYNPO-204ENST00000519664 HERPUD1Q15011 391 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 RPEL1Q2QD12 228 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 NHLRC2Q8NBF2 726 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 VSTM2AQ8TAG5 236 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 ANAPC16Q96DE5 110 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 STARD4Q96DR4 205 aa9.92□□□□□ -0.82
SYNPO-204ENST00000519664 K7N7A8 449 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 LDLRAD4O15165 306 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 CD55P08174 381 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 UCP1P25874 307 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PRRX1P54821 245 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 CLDN18P56856 261 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PRB3Q04118 309 aaPredicted RBP9.91□□□□□ -0.82
SYNPO-204ENST00000519664 Q6ZT83 130 aa9.91□□□□□ -0.82
SYNPO-204ENST00000519664 PDPNQ86YL7 162 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms