RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PNRC2Q9NPJ4 139 aaKnown RBP4.56□□□□□ -1.68
NUP54-218ENST00000515460 TAC3Q9UHF0 121 aa4.56□□□□□ -1.68
NUP54-218ENST00000515460 HSPB8Q9UJY1 196 aa4.56□□□□□ -1.68
NUP54-218ENST00000515460 VPREB3Q9UKI3 123 aa4.56□□□□□ -1.68
NUP54-218ENST00000515460 WDR45Q9Y484 360 aa4.56□□□□□ -1.68
NUP54-218ENST00000515460 PPIAL4AQ9Y536 164 aa4.56□□□□□ -1.68
NUP54-218ENST00000515460 ZNF860A6NHJ4 632 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 C9JQL5 133 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 C9JVG2 144 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 H0YIG0 161 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 H3BQ15 152 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 ZNF354AO60765 605 aaPredicted RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 HSPB1P04792 205 aaKnown RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 CRYGBP07316 175 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 IGLC2P0DOY2 106 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 IGLC3P0DOY3 106 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CELP19835 753 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CTRLP40313 264 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 FRKP42685 505 aaPredicted RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 LPAR6P43657 344 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 AMTP48728 403 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CX3CR1P49238 355 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CLDN15P56746 228 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 EIF2B1Q14232 305 aaKnown RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 OR1C1Q15619 314 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 GABRA6Q16445 453 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 LY6G6FQ5SQ64 297 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 ZNF678Q5SXM1 525 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 C12orf73Q69YU5 71 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 NIPAL3Q6P499 406 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 OPN5Q6U736 354 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 Q6ZRG5 221 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 MUC20Q8N307 709 aaPredicted RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 SLC5A8Q8N695 610 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 GPR32P1Q8NGA4 272 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 DCUN1D4Q92564 292 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 RAB8BQ92930 207 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 GRAMD2BQ96HH9 432 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 OR10C1Q96KK4 312 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 AQP10Q96PS8 301 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 TBX5Q99593 518 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 NIPSNAP3BQ9BS92 247 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 DERL1Q9BUN8 251 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 C20orf24Q9BUV8 137 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 TSSK6Q9BXA6 273 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 ULBP2Q9BZM5 246 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 TMEM126AQ9H061 195 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CYTL1Q9NRR1 136 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 NECAP2Q9NVZ3 263 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 ZNF107Q9UII5 783 aaPredicted RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 HSF4Q9ULV5 492 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 ICAM5Q9UMF0 924 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 BOKQ9UMX3 212 aaPredicted RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 YARS2Q9Y2Z4 477 aaKnown RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 FIS1Q9Y3D6 152 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CSDC2Q9Y534 153 aaKnown RBP4.55□□□□□ -1.68
NUP54-218ENST00000515460 RFNGQ9Y644 331 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 CACNA1CQ13936 2221 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 SPTBP11277 2137 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 PIKFYVEQ9Y2I7 2098 aa4.55□□□□□ -1.68
NUP54-218ENST00000515460 DSPPQ9NZW4 1301 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 TRAV1-2A0A0B4J238 106 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 FEZF1A0PJY2 475 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 LRP5LA4QPB2 252 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 PSMB11A5LHX3 300 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 MAP1LC3B2A6NCE7 125 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 A6NDN8 102 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 SIRPB1O00241 398 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 XRCC2O43543 280 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 CD5LO43866 347 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 FOXH1O75593 365 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 ZNF682O95780 498 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 NRASP01111 189 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 CATP04040 527 aaKnown RBP4.54□□□□□ -1.68
NUP54-218ENST00000515460 CD34P28906 385 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 TSPOP30536 169 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 BSGP35613 385 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 XCR1P46094 333 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 OR3A4PP47883 348 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 DNASE1L1P49184 302 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 GZMMP51124 257 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 CAV3P56539 151 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 TAS2R20P59543 309 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 HIST1H1AQ02539 215 aaPredicted RBP4.54□□□□□ -1.68
NUP54-218ENST00000515460 TFF3Q07654 80 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 FUT7Q11130 342 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 PPP1R8Q12972 351 aaKnown RBP4.54□□□□□ -1.68
NUP54-218ENST00000515460 ZNF266Q14584 549 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 P2RY6Q15077 328 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 PRICKLE4Q2TBC4 344 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 LCE1EQ5T753 118 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 CST9LP1Q5W188 147 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 UFSP1Q6NVU6 142 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 C12orf54Q6X4T0 127 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 FOXI2Q6ZQN5 318 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 DNM1P46Q6ZS02 220 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 RPS19BP1Q86WX3 136 aaKnown RBP4.54□□□□□ -1.68
NUP54-218ENST00000515460 GPSM1Q86YR5 675 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 ZNF440Q8IYI8 595 aa4.54□□□□□ -1.68
NUP54-218ENST00000515460 C1orf174Q8IYL3 243 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms