RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PXMP4Q9Y6I8 212 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 IGKV3D-15A0A087WSY6 115 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 PIGBOS1A0A0B4J2F0 54 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 MRPS11P82912 194 aaKnown RBP8.12□□□□□ -1.11
VCAN-210ENST00000513960 CXorf67Q86X51 503 aaPredicted RBP8.12□□□□□ -1.11
VCAN-210ENST00000513960 OR5P3Q8WZ94 311 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 ST6GALNAC6Q969X2 333 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 NPCDR1Q9BY65 106 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 PLEKHA3Q9HB20 300 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 C9orf172C9J069 976 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 RAMP3O60896 148 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 NGFP01138 241 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 IGKV1-39P01597 117 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 IGKV1D-39P04432 117 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 ARL14EPLP0DKL9 152 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 LHX2P50458 406 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 Q56UQ5 140 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 RNASE8Q8TDE3 154 aaKnown RBP8.12□□□□□ -1.11
VCAN-210ENST00000513960 CRIM1Q9NZV1 1036 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 SELENOKQ9Y6D0 94 aa8.12□□□□□ -1.11
VCAN-210ENST00000513960 RBFOX2O43251 390 aaKnown RBP eCLIP8.11□□□□□ -1.11
VCAN-210ENST00000513960 ZNF883P0CG24 379 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 CEBPDP49716 269 aaPredicted RBP8.11□□□□□ -1.11
VCAN-210ENST00000513960 CATR1Q13166 79 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 REPIN1Q9BWE0 567 aaKnown RBP8.11□□□□□ -1.11
VCAN-210ENST00000513960 TTTY12Q9BZ98 90 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.11□□□□□ -1.11
VCAN-210ENST00000513960 ZFP30Q9Y2G7 519 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 DOCK10Q96BY6 2186 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 LRP5LA4QPB2 252 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 RNF212BA8MTL3 300 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 S1PR2O95136 353 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 ARR3P36575 388 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 MIC13Q5XKP0 118 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 STPG4Q8N801 248 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 OR4B1Q8NGF8 309 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 OR5A2Q8NGI9 324 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 ZNF596Q8TC21 504 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 AGMATQ9BSE5 352 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 ELOVL5Q9NYP7 299 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 UQCR10Q9UDW1 63 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 LAMTOR2Q9Y2Q5 125 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 PDE6DO43924 150 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 RHBDL1O75783 438 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 GABRA2P47869 451 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 CLDN18P56856 261 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 LINC00205P59089 165 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 RPEL1Q2QD12 228 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 FAM53AQ6NSI3 398 aaPredicted RBP8.11□□□□□ -1.11
VCAN-210ENST00000513960 COLCA1Q6ZS62 124 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 ZNF295-AS1Q8N0V1 137 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 DRAM1Q8N682 238 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 TPRX1Q8N7U7 411 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 OR1L1Q8NH94 360 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 OCC1Q8TAD7 63 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 SLC35D1Q9NTN3 355 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 DLL3Q9NYJ7 618 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 BET1LQ9NYM9 111 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 FBXL7Q9UJT9 491 aa8.11□□□□□ -1.11
VCAN-210ENST00000513960 NCKAP5O14513 1909 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 DNAJC13O75165 2243 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 LNP1A1A4G5 178 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A10PA6NDY2 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A18PA6NE21 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A16PA6NEW6 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A20PA6NIJ5 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A8PA6NJQ4 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A7PA6NKC0 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A22PA8MWA6 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A12PA8MX19 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A5PA8MXJ8 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A23PA8MXZ1 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 C21orf140B9A014 251 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 VENTXO95231 258 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A15PP0C7V4 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A13PP0C7W8 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A14PP0C7W9 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FAM90A24PP0C7X0 464 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 PAX1P15863 534 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 NPPCP23582 126 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 PDLIM4P50479 330 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 ATP6V1FQ16864 119 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 CEACAM21Q3KPI0 293 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 LCN12Q6JVE5 192 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 PARD6GQ9BYG4 376 aaPredicted RBP8.1□□□□□ -1.11
VCAN-210ENST00000513960 GPR179Q6PRD1 2367 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 ODAMA1E959 279 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 HSBP1O75506 76 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FRMD6-AS1P0C7T7 363 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 SRIP30626 198 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FOXG1P55316 489 aaPredicted RBP8.1□□□□□ -1.11
VCAN-210ENST00000513960 PRAMEF5Q5TYX0 476 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 PRAMEF6Q5VXH4 476 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 TMEM251Q8N6I4 163 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 QTRT1Q9BXR0 403 aaKnown RBP8.1□□□□□ -1.11
VCAN-210ENST00000513960 NRN1Q9NPD7 142 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 FREM1Q5H8C1 2179 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 KRTCAP3Q53RY4 240 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 TPTE2P1Q5T6R2 138 aa8.1□□□□□ -1.11
VCAN-210ENST00000513960 ZNF324BQ6AW86 544 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms