RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 WSB1Q9Y6I7 421 aa9.02□□□□□ -0.97
LIMCH1-210ENST00000509454 IGHV7-81A0A0B4J1V7 117 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 TCRBV4S1A1TA0A5B7 111 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 SRRM4A7MD48 611 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 ATP6V0E1O15342 81 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 RAMP3O60896 148 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 HRASP01112 189 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 IGLV2-23P01705 113 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 SAA1P0DJI8 122 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 ETV6P41212 452 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 UCP3P55916 312 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 UBE2KP61086 200 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 CX3CL1P78423 397 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 C10orf99Q6UWK7 81 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 TBC1D26Q86UD7 250 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 PPP1R27Q86WC6 154 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 OR51S1Q8NGJ8 323 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 OR13C8Q8NGS7 320 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 ZFAND1Q8TCF1 268 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 MARCH1Q8TCQ1 289 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 CD300LFQ8TDQ1 290 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 PRRT1Q99946 306 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 SRRQ9GZT4 340 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 COPZ2Q9P299 210 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 SCP2D1Q9UJQ7 156 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 C14orf166Q9Y224 244 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 TENM1Q9UKZ4 2725 aa9.01□□□□□ -0.97
LIMCH1-210ENST00000509454 LINC00854A0A1B0GVQ3 168 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 M0QZ24 198 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ACTL6BO94805 426 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 RPA2P15927 270 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 PIGPP57054 158 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ERVK-16P61578 105 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 FXYD3Q14802 87 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 TNXAQ16473 311 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 CCDC71LQ8N9Z2 235 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 TEX45Q8NA69 505 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 DMBX1Q8NFW5 382 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ARPC1AQ92747 370 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 PHB2Q99623 299 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 CITED2Q99967 270 aaPredicted RBP9□□□□□ -0.97
LIMCH1-210ENST00000509454 FAM103A1Q9BTL3 118 aaKnown RBP9□□□□□ -0.97
LIMCH1-210ENST00000509454 HRASLSQ9HDD0 168 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 SLC2A9Q9NRM0 540 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 TET2Q6N021 2002 aaPredicted RBP9□□□□□ -0.97
LIMCH1-210ENST00000509454 TRAV41A0A0B4J266 112 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 G3V318 75 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 CREBL2O60519 120 aaPredicted RBP9□□□□□ -0.97
LIMCH1-210ENST00000509454 S1PR2O95136 353 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 HPRT1P00492 218 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF735P0CB33 412 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 F2RP25116 425 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ECI1P42126 302 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 LPAR6P43657 344 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF45Q02386 682 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 PJVKQ0ZLH3 352 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 UNQ5815/PRO19632Q6UWF5 114 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 LHFPL1Q86WI0 220 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 GDPD1Q8N9F7 314 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 VSTM2AQ8TAG5 236 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 TRIM63Q969Q1 353 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF486Q96H40 463 aaPredicted RBP9□□□□□ -0.97
LIMCH1-210ENST00000509454 RHOVQ96L33 236 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 AIFM2Q9BRQ8 373 aa9□□□□□ -0.97
LIMCH1-210ENST00000509454 PLXNB1O43157 2135 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 TEX13DA0A0J9YY54 714 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 MPPED1O15442 326 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 RBFOX2O43251 390 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 OR2A4O95047 310 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 OPN1MWP04001 364 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 SERPINE2P07093 398 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 OPN1MW2P0DN77 364 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 OPN1MW3P0DN78 364 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 NQO2P16083 231 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 BRWD1-AS2P59051 145 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 NDPQ00604 133 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 TMEM267Q0VDI3 215 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 KLF9Q13886 244 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 PRSS8Q16651 343 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 C2orf68Q2NKX9 166 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 CXorf66Q5JRM2 361 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 TEX38Q6PEX7 206 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 ZNF562Q6V9R5 426 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 SGMS2Q8NHU3 365 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 R3HDM4Q96D70 268 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 OR2A7Q96R45 310 aa8.99□□□□□ -0.97
LIMCH1-210ENST00000509454 A0A1W2PN81 502 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 NUDT19A8MXV4 375 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 ARPC1BO15143 372 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 KBTBD11O94819 623 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 IGF1P05019 195 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 CRYGBP07316 175 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 CTSDP07339 412 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 APELAP0DMC3 54 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 PF4V1P10720 104 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 CHRNA7P36544 502 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 TAS2R31P59538 309 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 BAK1Q16611 211 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 TMEM65Q6PI78 240 aa8.98□□□□□ -0.97
LIMCH1-210ENST00000509454 MMD2Q8IY49 270 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms