RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 CRIP2P52943 208 aaPredicted RBP12.46□□□□□ -0.41
LIME1-209ENST00000494776 IL18Q14116 193 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 TNXAQ16473 311 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 AKIRIN2Q53H80 203 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 AADACL3Q5VUY0 350 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 CMTM1Q8IZ96 169 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 SPAG16Q8N0X2 631 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 POC5Q8NA72 575 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 MINDY2Q8NBR6 621 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 OR51H1Q8NH63 302 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 MCFD2Q8NI22 146 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 PHB2Q99623 299 aa12.46□□□□□ -0.41
LIME1-209ENST00000494776 M0QYG6 137 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 WIPF1O43516 503 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 HRASP01112 189 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 IGLV1-40P01703 118 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 S100GP29377 79 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 GNRHRP30968 328 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 RAB9AP51151 201 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 MRPS10P82664 201 aaKnown RBP12.45□□□□□ -0.42
LIME1-209ENST00000494776 PRSS8Q16651 343 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 RNASE10Q5GAN6 216 aaKnown RBP12.45□□□□□ -0.42
LIME1-209ENST00000494776 PYHIN1Q6K0P9 492 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 LPCAT3Q6P1A2 487 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 C1QL4Q86Z23 238 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 VKORC1L1Q8N0U8 176 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 OR5M8Q8NGP6 311 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 VSTM2AQ8TAG5 236 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 AIFM2Q9BRQ8 373 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 SLIRPQ9GZT3 109 aaKnown RBP12.45□□□□□ -0.42
LIME1-209ENST00000494776 KLK15Q9H2R5 256 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 ZNF355PQ9NSJ1 428 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 RABL2AQ9UBK7 228 aaPredicted RBP12.45□□□□□ -0.42
LIME1-209ENST00000494776 MTFP1Q9UDX5 166 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 RSL24D1Q9UHA3 163 aaKnown RBP12.45□□□□□ -0.42
LIME1-209ENST00000494776 RABL2BQ9UNT1 228 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 WNK1Q9H4A3 2382 aa12.45□□□□□ -0.42
LIME1-209ENST00000494776 GABARAPH6UMI1 98 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 MYCNOSP40205 109 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 VAX1Q5SQQ9 334 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 SSX9Q7RTT3 188 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 CD300LFQ8TDQ1 290 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 CASTOR1Q8WTX7 329 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 FXYD6Q9H0Q3 95 aa12.44□□□□□ -0.42
LIME1-209ENST00000494776 G3V4G9 280 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 CCL24O00175 119 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 GPR31O00270 319 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 MPPED1O15442 326 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 RAMP3O60896 148 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 OR2A4O95047 310 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 CD3DP04234 171 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 RLN1P04808 185 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 RAB25P57735 213 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 BRWD1-AS2P59051 145 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 DGCR2P98153 550 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 DEFA6Q01524 100 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 C19orf54Q5BKX5 351 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 MMD2Q8IY49 270 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 ZNF491Q8N8L2 437 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 OR5T1Q8NG75 326 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 C4orf3Q8WVX3 66 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 RHOVQ96L33 236 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 UBE2E2Q96LR5 201 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 TMEM68Q96MH6 324 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 MS4A10Q96PG2 267 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 DUX3Q96PT4 197 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 OR5B12Q96R08 314 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 OR2A7Q96R45 310 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 ZNF430Q9H8G1 570 aaPredicted RBP12.43□□□□□ -0.42
LIME1-209ENST00000494776 VSIG4Q9Y279 399 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 VWFP04275 2813 aa12.43□□□□□ -0.42
LIME1-209ENST00000494776 MSGN1A6NI15 193 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 RBFOX2O43251 390 aaKnown RBP eCLIP12.42□□□□□ -0.42
LIME1-209ENST00000494776 SOX15O60248 233 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 PGLYRP1O75594 196 aaPredicted RBP12.42□□□□□ -0.42
LIME1-209ENST00000494776 HPRT1P00492 218 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 APELAP0DMC3 54 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 TBPP20226 339 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 TPPP2P59282 170 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 TAS2R19P59542 299 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 SSBP2P81877 361 aaPredicted RBP12.42□□□□□ -0.42
LIME1-209ENST00000494776 DEFB136Q30KP8 78 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 PHLDA2Q53GA4 152 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 ETV3LQ6ZN32 361 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 MRPL41Q8IXM3 137 aaKnown RBP12.42□□□□□ -0.42
LIME1-209ENST00000494776 TMEM229BQ8NBD8 167 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 WFDC9Q8NEX5 89 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 SRSF12Q8WXF0 261 aaKnown RBP12.42□□□□□ -0.42
LIME1-209ENST00000494776 RAX2Q96IS3 184 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 TINAGL1Q9GZM7 467 aaPredicted RBP12.42□□□□□ -0.42
LIME1-209ENST00000494776 HRASLSQ9HDD0 168 aa12.42□□□□□ -0.42
LIME1-209ENST00000494776 FABP12A6NFH5 140 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 KBTBD11O94819 623 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 RAB3DO95716 219 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 PGAM2P15259 253 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 IGLL1P15814 213 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 TNFSF8P32971 234 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 S100A5P33763 92 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 TAS2R31P59538 309 aa12.41□□□□□ -0.42
LIME1-209ENST00000494776 SSBP1Q04837 148 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms