RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 GNB2P62879 340 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 VWC2Q2TAL6 325 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 PDLIM3Q53GG5 364 aaPredicted RBP17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 ZNF506Q5JVG8 444 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 ETV3LQ6ZN32 361 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 SSX7Q7RTT5 188 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 MBD3L1Q8WWY6 194 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 ADTRPQ96IZ2 230 aa17.33■□□□□ 0.37
CCDC88B-208ENST00000492980 FAM90A27PA6NNH2 459 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 SCAF4O95104 1147 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 ARG1P05089 322 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 CD3EP07766 207 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 ELLP55199 621 aaPredicted RBP17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 RPL31P62899 125 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 AWAT1Q58HT5 328 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 ST6GALNAC3Q8NDV1 305 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 RCC1LQ96I51 464 aaKnown RBP17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 GAL3ST2Q9H3Q3 398 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 IGF2RP11717 2491 aa17.33■□□□□ 0.36
CCDC88B-208ENST00000492980 ROS1P08922 2347 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 LY86O95711 162 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 ERVFRD-1P60508 538 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 EFNB3Q15768 340 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 HFEQ30201 348 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 FBXL19-AS1Q494R0 122 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 OR10A7Q8NGE5 316 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 ZCCHC14Q8WYQ9 949 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 MS4A5Q9H3V2 200 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 NDRG3Q9UGV2 375 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 YLPM1P49750 1951 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 SMG1Q96Q15 3661 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 SRP19P09132 144 aaKnown RBP17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 APOBEC3AP31941 199 aaPredicted RBP17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 AKIRIN2Q53H80 203 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 LYPD2Q6UXB3 125 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 LINC01560Q8TB33 94 aa17.32■□□□□ 0.36
CCDC88B-208ENST00000492980 TET2Q6N021 2002 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 FGF7P21781 194 aa17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 VDAC2P45880 294 aaPredicted RBP17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 SOHLH1Q5JUK2 328 aa17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 ZNF787Q6DD87 383 aa17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 ZNF429Q86V71 674 aa17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 ZNRD1Q9P1U0 126 aa17.31■□□□□ 0.36
CCDC88B-208ENST00000492980 CCL21O00585 134 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 PLAUP00749 431 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 HSPB1P04792 205 aaKnown RBP17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 CCL3L1P16619 93 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 CHRNB4P30926 498 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 TFF3Q07654 80 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 LCN15Q6UWW0 184 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 RXFP4Q8TDU9 374 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 ZNF714Q96N38 554 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 LOC102723971A0A1B0GUV8 181 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 IGKV1D-33P01593 117 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 IGKV1-33P01594 117 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 DAOP14920 347 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 MDKP21741 143 aaPredicted RBP17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 AKR1C3P42330 323 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 HNF4GQ14541 408 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 TMEM200BQ69YZ2 307 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 OR4A47Q6IF82 309 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 ACSM6Q6P461 480 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 RHOVQ96L33 236 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 RPS10P5Q9NQ39 176 aa17.3■□□□□ 0.36
CCDC88B-208ENST00000492980 C7orf77A4D0Y5 90 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 C15orf61A6NNL5 157 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 B9A039 149 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 M0R036 132 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 SNRNP70P08621 437 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 CT45A6P0DMU7 189 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 CT45A5P0DMU8 189 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 CT45A7P0DMV0 189 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 GRNP28799 593 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 KHDC3LQ587J8 217 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 HEPN1Q6WQI6 88 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 CLCC1Q96S66 551 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 C20orf24Q9BUV8 137 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 SMCO4Q9NRQ5 59 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 GNG13Q9P2W3 67 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 CTSZQ9UBR2 303 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 TCF19Q9Y242 345 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 POLEQ07864 2286 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 ADGRG4Q8IZF6 3080 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 NDUFB3O43676 98 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 FGF8P55075 233 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 NPCDR1Q9BY65 106 aa17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 HEYLQ9NQ87 328 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-208ENST00000492980 ARFGEF3Q5TH69 2177 aa17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 FBP1P09467 338 aa17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 RPP30P78346 268 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 POU2AF1Q16633 256 aa17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 LRRC10Q5BKY1 277 aa17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 RPP25LQ8N5L8 163 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 FOXA2Q9Y261 457 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 PKDREJQ9NTG1 2253 aa17.28■□□□□ 0.36
CCDC88B-208ENST00000492980 IFNA10P01566 189 aa17.27■□□□□ 0.36
CCDC88B-208ENST00000492980 H1FXQ92522 213 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-208ENST00000492980 UNKLQ9H9P5 680 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-208ENST00000492980 IGHV1-69-2A0A0G2JMI3 117 aa17.27■□□□□ 0.35
CCDC88B-208ENST00000492980 MAP1LC3B2A6NCE7 125 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms