RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 K7EQM0 130 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 HMGB3O15347 200 aaKnown RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 ZNF207O43670 478 aaKnown RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 TSPAN13O95857 204 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 FTH1P19P0C7X4 201 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 HLA-DOBP13765 273 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 CD1BP29016 333 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 SRIP30626 198 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 CA7P43166 264 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 DAP3P51398 398 aaKnown RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 SUMO3P55854 103 aaPredicted RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 TLE1Q04724 770 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 SLC38A11Q08AI6 406 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 KLF5Q13887 457 aaPredicted RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 FAM162BQ5T6X4 162 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 TMEM215Q68D42 235 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 WDR74Q6RFH5 385 aaPredicted RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 FA2HQ7L5A8 372 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 TMEFF1Q8IYR6 380 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 GATSQ8NAP1 163 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 LSM10Q969L4 123 aaKnown RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 ZNF524Q96C55 264 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 FOXB1Q99853 325 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 SPATA25Q9BR10 227 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 TIMM29Q9BSF4 260 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 VN1R3Q9BXE9 311 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 LINC00470Q9BZP3 86 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 GEMIN7Q9H840 131 aaKnown RBP4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 SLC7A10Q9NS82 523 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 HEBP2Q9Y5Z4 205 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 XIRP2A4UGR9 3374 aa4.01□□□□□ -1.77
SNRNP40-206ENST00000489853 REV3LO60673 3130 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4□□□□□ -1.77
SNRNP40-206ENST00000489853 OR4C46A6NHA9 309 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 CD300LBA8K4G0 201 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 C9JCJ5 164 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 NPIPA5E9PKD4 350 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 MS4A18H0YCH9 400 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 M0R2Z0 102 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 BMPR1BO00238 502 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 F2RL2O00254 374 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 SLC17A3O00476 420 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 DUSP11O75319 330 aaKnown RBP4□□□□□ -1.77
SNRNP40-206ENST00000489853 HSBP1O75506 76 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 UTS2O95399 124 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 APCSP02743 223 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 AMY1AP04745 511 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 GP1BBP13224 206 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 DRD1P21728 446 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 PTGDSP41222 190 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 OR1D4P47884 311 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 RPL24P83731 157 aaKnown RBP4□□□□□ -1.77
SNRNP40-206ENST00000489853 TNXAQ16473 311 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 SRSF7Q16629 238 aaKnown RBP eCLIP4□□□□□ -1.77
SNRNP40-206ENST00000489853 MS4A18Q3C1V0 323 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 KIAA1644Q3SXP7 199 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 TMEM97Q5BJF2 176 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 PRAMEF5Q5TYX0 476 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 PRAMEF6Q5VXH4 476 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 CCDC144NLQ6NUI1 221 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 C17orf99Q6UX52 265 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 CXCL17Q6UXB2 119 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 ZNF818PQ6ZRF7 136 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 Q6ZS49 121 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 Q6ZSR3 168 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 Q6ZSR6 202 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 SPATA12Q7Z6I5 190 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 GAPTQ8N292 157 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 OR2Z1Q8NG97 314 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 OR10AG1Q8NH19 301 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 OR4A5Q8NH83 315 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 RDH5Q92781 318 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 RAB1CQ92928 201 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 NAT6Q93015 286 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 SPSB4Q96A44 273 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 MBD6Q96DN6 1003 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 SCRT2Q9NQ03 307 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 KCNIP1Q9NZI2 227 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 NPIPA1Q9UND3 350 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 ARL2-SNX15V9GYD0 113 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 COL4A2P08572 1712 aa4□□□□□ -1.77
SNRNP40-206ENST00000489853 PHF3Q92576 2039 aaKnown RBP4□□□□□ -1.77
SNRNP40-206ENST00000489853 TRBV20OR9-2A0A075B6H5 130 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 TMED7-TICAM2A0A0A6YYA0 188 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 IGKV1D-43A0A0B4J1Z2 117 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 A0A0G2JLM5 398 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 UBE2L5PA0A1B0GUS4 154 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 PGPEP1LA6NFU8 196 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 ANKRD30BLA7E2S9 258 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 J3KRW8 73 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 PGLYRP1O75594 196 aaPredicted RBP3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 SNRNP200O75643 2136 aaKnown RBP3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 NXPH3O95157 252 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 IGLV3-1P01715 115 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 CRYAAP02489 173 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 FRMD6-AS1P0C7T7 363 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 SP9P0CG40 484 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 EGR1P18146 543 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 PGCP20142 388 aa3.99□□□□□ -1.77
SNRNP40-206ENST00000489853 F2RP25116 425 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms