RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KIR2DS2P43631 304 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 RNASE10Q5GAN6 216 aaKnown RBP11.55□□□□□ -0.56
USP4-212ENST00000486549 PYHIN1Q6K0P9 492 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 UNQ5815/PRO19632Q6UWF5 114 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 ZNF562Q6V9R5 426 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 C8orf86Q6ZUL3 223 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 VKORC1L1Q8N0U8 176 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 SPAG16Q8N0X2 631 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 LFNGQ8NES3 379 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 CASTOR1Q8WTX7 329 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 BORCS5Q969J3 196 aa11.55□□□□□ -0.56
USP4-212ENST00000486549 NXF2Q9GZY0 626 aaKnown RBP11.55□□□□□ -0.56
USP4-212ENST00000486549 RAMP3O60896 148 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 IFNA6P05013 189 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 EGR2P11161 476 aaPredicted RBP11.54□□□□□ -0.56
USP4-212ENST00000486549 TNFSF8P32971 234 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 BRWD1-AS2P59051 145 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 SSBP2P81877 361 aaPredicted RBP11.54□□□□□ -0.56
USP4-212ENST00000486549 MRPS10P82664 201 aaKnown RBP11.54□□□□□ -0.56
USP4-212ENST00000486549 TMEM267Q0VDI3 215 aaPredicted RBP11.54□□□□□ -0.56
USP4-212ENST00000486549 TNXAQ16473 311 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 VAX1Q5SQQ9 334 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 TMEM65Q6PI78 240 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 SSX9Q7RTT3 188 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 TEX45Q8NA69 505 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 SMIM4Q8WVI0 70 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 ZFP57Q9NU63 452 aa11.54□□□□□ -0.56
USP4-212ENST00000486549 FOXA2Q9Y261 457 aaPredicted RBP11.54□□□□□ -0.56
USP4-212ENST00000486549 FABP12A6NFH5 140 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 ZNF701M0R085 212 aaPredicted RBP11.53□□□□□ -0.56
USP4-212ENST00000486549 GPR31O00270 319 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 APELAP0DMC3 54 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 PSMB8P28062 276 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 CRIP2P52943 208 aaPredicted RBP11.53□□□□□ -0.56
USP4-212ENST00000486549 TAS2R19P59542 299 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 PRSS8Q16651 343 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 MRGPRG-AS1Q2M3A8 158 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 PHLDA2Q53GA4 152 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 ZNF695Q8IW36 515 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 CMTM1Q8IZ96 169 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 POC5Q8NA72 575 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 TMEM229BQ8NBD8 167 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 MINDY2Q8NBR6 621 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 OR4D10Q8NGI6 311 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 PHB2Q99623 299 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 KLK15Q9H2R5 256 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 RABL2AQ9UBK7 228 aaPredicted RBP11.53□□□□□ -0.56
USP4-212ENST00000486549 RABL2BQ9UNT1 228 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 NUBP2Q9Y5Y2 271 aa11.53□□□□□ -0.56
USP4-212ENST00000486549 SOX15O60248 233 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 PGLYRP1O75594 196 aaPredicted RBP11.52□□□□□ -0.57
USP4-212ENST00000486549 RAB3DO95716 219 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 HRASP01112 189 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 IGLV1-40P01703 118 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 PGAM2P15259 253 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 TBPP20226 339 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 PPP5CP53041 499 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 DEFB136Q30KP8 78 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 C19orf54Q5BKX5 351 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 STEAP1BQ6NZ63 245 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 TCTEX1D1Q8N7M0 179 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 RNF152Q8N8N0 203 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 DUX3Q96PT4 197 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 ZNF430Q9H8G1 570 aaPredicted RBP11.52□□□□□ -0.57
USP4-212ENST00000486549 TNCP24821 2201 aa11.52□□□□□ -0.57
USP4-212ENST00000486549 NOTCH1P46531 2555 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 CTDSPLO15194 276 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 CREBL2O60519 120 aaPredicted RBP11.51□□□□□ -0.57
USP4-212ENST00000486549 ACTL6BO94805 426 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 KBTBD11O94819 623 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 OR2A4O95047 310 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 S1PR2O95136 353 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 CD74P04233 296 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 CD33P20138 364 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 S100GP29377 79 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 S100A5P33763 92 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 SSBP1Q04837 148 aaKnown RBP11.51□□□□□ -0.57
USP4-212ENST00000486549 SCGB2B2Q4G0G5 96 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 AKIRIN2Q53H80 203 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 C10orf55Q5SWW7 151 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 FAAP20Q6NZ36 180 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 LPCAT3Q6P1A2 487 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 ETV3LQ6ZN32 361 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 C1QL4Q86Z23 238 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 MMD2Q8IY49 270 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 SLC38A6Q8IZM9 456 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 ARRDC1Q8N5I2 433 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 VSTM2AQ8TAG5 236 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 SRSF12Q8WXF0 261 aaKnown RBP11.51□□□□□ -0.57
USP4-212ENST00000486549 RHOVQ96L33 236 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 MS4A10Q96PG2 267 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 OR5B12Q96R08 314 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 OR2A7Q96R45 310 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 RSRP1Q9BUV0 290 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 ZNF355PQ9NSJ1 428 aa11.51□□□□□ -0.57
USP4-212ENST00000486549 MSGN1A6NI15 193 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 MPPED1O15442 326 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 RBFOX2O43251 390 aaKnown RBP eCLIP11.5□□□□□ -0.573e-6■■■■□ 21.5
USP4-212ENST00000486549 HPRT1P00492 218 aa11.5□□□□□ -0.57
USP4-212ENST00000486549 RPA2P15927 270 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms