RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 TLE1Q04724 770 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 TMEM183AQ8IXX5 376 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 S100PBPQ96BU1 408 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 BTF3L4Q96K17 158 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 TXNDC17Q9BRA2 123 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 OPN3Q9H1Y3 402 aaPredicted RBP12.76□□□□□ -0.37
C9orf3-218ENST00000482056 PCNX2A6NKB5 2137 aa12.76□□□□□ -0.37
C9orf3-218ENST00000482056 IGKV1D-17A0A075B6S4 117 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 F2RL2O00254 374 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 GATCO43716 136 aaKnown RBP12.75□□□□□ -0.37
C9orf3-218ENST00000482056 HIST1H1BP16401 226 aaKnown RBP12.75□□□□□ -0.37
C9orf3-218ENST00000482056 EGR1P18146 543 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 OPRK1P41145 380 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 RAB7AP51149 207 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 LINC00205P59089 165 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 CR1LQ2VPA4 569 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 PDLIM3Q53GG5 364 aaPredicted RBP12.75□□□□□ -0.37
C9orf3-218ENST00000482056 SSX9Q7RTT3 188 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 PACRGQ96M98 296 aaPredicted RBP12.75□□□□□ -0.37
C9orf3-218ENST00000482056 DUSP13Q9UII6 198 aa12.75□□□□□ -0.37
C9orf3-218ENST00000482056 OR2T10Q8NGZ9 312 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 STARD4Q96DR4 205 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 SLC25A15Q9Y619 301 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 TNFSF13O75888 250 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 WISP2O76076 250 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 CD99P14209 185 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 EDDM3BP56851 147 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 CST9LP1Q5W188 147 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 OR4S2Q8NH73 311 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 ACY3Q96HD9 319 aa12.74□□□□□ -0.37
C9orf3-218ENST00000482056 HEATR1Q9H583 2144 aaKnown RBP12.73□□□□□ -0.37
C9orf3-218ENST00000482056 A0A1W2PPQ1 181 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 ITGB1BP1O14713 200 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 CGAP01215 116 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 OR1P1Q8NH06 330 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 HIST1H2BLQ99880 126 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 FAM234AQ9H0X4 552 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 NCOR1P1Q9H4R4 102 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 HCFC1P51610 2035 aa12.73□□□□□ -0.37
C9orf3-218ENST00000482056 TRAV38-1A0A0B4J264 116 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TRGV8A0A0C4DH27 118 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 GGCTO75223 188 aaKnown RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 VDAC2P45880 294 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 KLF3P57682 345 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TMPRSS3P57727 454 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 LOXL3P58215 753 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 RELBQ01201 579 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 RTP5Q14D33 572 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 RPL39P5Q59GN2 51 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 CISD2Q8N5K1 135 aaKnown RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 GCSAMQ8N6F7 178 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 Q8N7P7 452 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 PLPPR2Q96GM1 343 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 PCGF1Q9BSM1 259 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 IFI27L2Q9H2X8 130 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TMEM140Q9NV12 185 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 CALYQ9NYX4 217 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 ZMAT5Q9UDW3 170 aaKnown RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 COL6A3P12111 3177 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 IGHV3OR15-7A0A075B7D8 119 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TMPRSS2O15393 492 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 GALR2O43603 387 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 PROP1O75360 226 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 CXorf1O96002 111 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 IGHV3-13P01766 116 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 ZNF83P51522 516 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 LCN2P80188 198 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 DEFA6Q01524 100 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 SRSF6Q13247 344 aaKnown RBP12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TREML4Q6UXN2 200 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 PIP4P1Q86T03 277 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 MOGAT3Q86VF5 341 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TMEM170AQ8WVE7 144 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 MEGF10Q96KG7 1140 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 OR2V2Q96R30 315 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 ENY2Q9NPA8 101 aa12.72□□□□□ -0.37
C9orf3-218ENST00000482056 TRBV23-1A0A0A0MS06 115 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 XKRY2A2RUG3 117 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 MBD3L4A6NDZ8 208 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-218ENST00000482056 MBD3L3A6NE82 208 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-218ENST00000482056 MBD3L5A6NJ08 208 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-218ENST00000482056 M0R1B8 84 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 CRYAAP02489 173 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 TYMSP04818 313 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 FTH1P19P0C7X4 201 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 RD3LP0DJH9 198 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 UBE2G2P60604 165 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 COA6Q5JTJ3 125 aaKnown RBP12.71□□□□□ -0.37
C9orf3-218ENST00000482056 OR5R1Q8NH85 324 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 MBD3L2Q8NHZ7 208 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-218ENST00000482056 ELOVL1Q9BW60 279 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 ASCL3Q9NQ33 180 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 DKK4Q9UBT3 224 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 TCF19Q9Y242 345 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 PXMP4Q9Y6I8 212 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 WDFY4Q6ZS81 3184 aa12.71□□□□□ -0.37
C9orf3-218ENST00000482056 DVL1O14640 695 aa12.7□□□□□ -0.38
C9orf3-218ENST00000482056 RRHO14718 337 aa12.7□□□□□ -0.38
C9orf3-218ENST00000482056 GFRA3O60609 400 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms