RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 RBFOX2O43251 390 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP48-208ENST00000479177 IGKV1-39P01597 117 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 IGKV1D-39P04432 117 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 ARG1P05089 322 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 CXCL3P19876 107 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 GATA3P23771 443 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 THBS3P49746 956 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 GZMKP49863 264 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 PRRX1P54821 245 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 BRWD1-AS2P59051 145 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 LINC00205P59089 165 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 DIAPH2-AS1Q14236 149 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 GAGE13Q4V321 117 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 ZNF585BQ52M93 769 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 LDLRAD2Q5SZI1 272 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 TPTE2P1Q5T6R2 138 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 DCAF12L2Q5VW00 463 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 LGI3Q8N145 548 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 TCTEX1D1Q8N7M0 179 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 LRTM2Q8N967 370 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 ZNF383Q8NA42 475 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 DRAXINQ8NBI3 349 aaPredicted RBP5.37□□□□□ -1.55
USP48-208ENST00000479177 OR11H7Q8NGC8 314 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 OR5M8Q8NGP6 311 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 IL22RA2Q969J5 263 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 ADTRPQ96IZ2 230 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 C18orf12Q96KH6 178 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 TMEM56Q96MV1 263 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 HIF1ANQ9NWT6 349 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 MGAT4CQ9UBM8 478 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 KCNIP3Q9Y2W7 256 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 TMEM56-RWDD3S4R434 201 aa5.37□□□□□ -1.55
USP48-208ENST00000479177 F8P00451 2351 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 DUXBA0A1W2PPF3 345 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 A0A1W2PPI3 338 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 A8MV72 311 aaPredicted RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 H0YJW9 148 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 J3QLI3 93 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CCSO14618 274 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 GOSR2O14653 212 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 TXNL1O43396 289 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 RAMP3O60896 148 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 FCGR3BO75015 233 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 ADAP1O75689 374 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 S1PR2O95136 353 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CDS2O95674 445 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 SERPINE2P07093 398 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CT45A6P0DMU7 189 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CT45A5P0DMU8 189 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CT45A7P0DMV0 189 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 HLA-GP17693 338 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 KIR2DS2P43631 304 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 REG1BP48304 166 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 UBE2E1P51965 193 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 ZNF816Q0VGE8 651 aaPredicted RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 OR2B11Q5JQS5 317 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 MINOS1Q5TGZ0 78 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 TMEM268Q5VZI3 342 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 Q6ZRM9 215 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 LHFPL4Q7Z7J7 247 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 AKAP14Q86UN6 197 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 TGIF2LXQ8IUE1 241 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 PDZD9Q8IXQ8 264 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 SELENOHQ8IZQ5 122 aaKnown RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 SPAG16Q8N0X2 631 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CIARTQ8N365 385 aaPredicted RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 SLC35G3Q8N808 338 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 UXS1Q8NBZ7 420 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 OR4S2Q8NH73 311 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 IL17DQ8TAD2 202 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 CD300LFQ8TDQ1 290 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 RBPMSQ93062 196 aaKnown RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 LHX4Q969G2 390 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 ST6GAL2Q96JF0 529 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 NABP2Q9BQ15 211 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 NEURL2Q9BR09 285 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 RAB18Q9NP72 206 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 COMMD9Q9P000 198 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 DPM3Q9P2X0 92 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 PRELID3BQ9Y3B1 194 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 TBL2Q9Y4P3 447 aaKnown RBP5.36□□□□□ -1.55
USP48-208ENST00000479177 AUP1Q9Y679 476 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 MINOS1-NBL1R4GNA1 71 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 HIVEP2P31629 2446 aa5.36□□□□□ -1.55
USP48-208ENST00000479177 TRAV40A0A0B4J280 105 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 IGHV1-69DA0A0B4J2H0 117 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 IGHV1-3A0A0C4DH29 117 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 A0A0G2JRQ6 117 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 CENPVL3A0A0U1RRI6 287 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 A0A1W2PRD5 423 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 A0A1W2PRF3 423 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 A0A1W2PRM7 423 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 LEUTXA8MZ59 168 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 OOSP1A8MZH6 123 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 NPFFO15130 113 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 CCNKO75909 580 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 OR2A4O95047 310 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 SIX6O95475 246 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 TGFAP01135 160 aa5.35□□□□□ -1.55
USP48-208ENST00000479177 IGKV1-5P01602 117 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms