RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 BMPR1BO00238 502 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR2A4O95047 310 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CRYZL1O95825 349 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR9G9P0C7N8 305 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RAB3BP20337 219 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 BRWD1-AS2P59051 145 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 MRPS15P82914 257 aaKnown RBP9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 NEDD8Q15843 81 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 VMA21Q3ZAQ7 101 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TIMM50Q3ZCQ8 353 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 IDO2Q6ZQW0 420 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TPRA1Q86W33 373 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SGPP2Q8IWX5 399 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TTC9CQ8N5M4 171 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SNAPC3Q92966 411 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RSRP1Q9BUV0 290 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZNF430Q9H8G1 570 aaPredicted RBP9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 AKIP1Q9NQ31 210 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 COA4Q9NYJ1 87 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 DNAH1Q9P2D7 4330 aa9.29□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 LCE6AA0A183 80 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 FAM223BA6NKX1 122 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 SAA1P0DJI8 122 aaPredicted RBP9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 APELAP0DMC3 54 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 RPL30P62888 115 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CBX3Q13185 183 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ARL6IP1Q15041 203 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CDK10Q15131 360 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TNXAQ16473 311 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 CDNFQ49AH0 187 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 C22orf42Q6IC83 251 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 FAM223AQ8IWN6 122 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 ZNF645Q8N7E2 425 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR2K2Q8NGT1 345 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 GINS4Q9BRT9 223 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 DCSTAMPQ9H295 470 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 TXNL4BQ9NX01 149 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 GAR1Q9NY12 217 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 OR2W1Q9Y3N9 320 aa9.28□□□□□ -0.92
MSH5-SAPCD1-205ENST00000476085 A0A075B6Q4 140 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 IGKV1D-13A0A0B4J2D9 117 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 A0A1B0GW64 132 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZNF785A8K8V0 405 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TEX22C9J3V5 150 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 E7EUB6 86 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TUSC2O75896 110 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PRH1P02810 166 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CTXN2P0C2S0 81 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 IGKV1-13P0DP09 117 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CD36P16671 472 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RHOGP84095 191 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ARFRP1Q13795 201 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TATDN3Q17R31 274 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RPEL1Q2QD12 228 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 HACD4Q5VWC8 232 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 MMD2Q8IY49 270 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 Q8N402 240 aa9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RBMX2Q9Y388 322 aaKnown RBP9.27□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 AIREO43918 545 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SSX5O60225 188 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SLC22A5O76082 557 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 IL6RP08887 468 aaPredicted RBP9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TALDO1P37837 337 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 LCN12Q6JVE5 192 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CNIH2Q6PI25 160 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PUSL1Q8N0Z8 303 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NECAP1Q8NC96 275 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PHB2Q99623 299 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SPIN2AQ99865 258 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SPIN2BQ9BPZ2 258 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 SPATA25Q9BR10 227 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ATG5Q9H1Y0 275 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 OR51E2Q9H255 320 aa9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 RBM7Q9Y580 266 aaKnown RBP9.26□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NOTOA8MTQ0 251 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 FCGR3BO75015 233 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 TMEM127O75204 238 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NFYAP23511 347 aaPredicted RBP9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ATP5G2Q06055 141 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 EXOSC2Q13868 293 aaKnown RBP9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 DEFB114Q30KQ6 69 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 C10orf55Q5SWW7 151 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 LAX1Q8IWV1 398 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ACOT12Q8WYK0 555 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ISOC1Q96CN7 298 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 FANCD2OSQ96PS1 177 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC5Q9BVH7 336 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 HIPK2Q9H2X6 1198 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZC4H2Q9NQZ6 224 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 PEMTQ9UBM1 199 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZNF257Q9Y2Q1 563 aa9.25□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 LOC100506127A0A0U1RQW1 187 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 NPIPB5A8MRT5 1133 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 LGALS9O00182 355 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CREBL2O60519 120 aaPredicted RBP9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 CRYGCP07315 174 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 ZNF735P0CB33 412 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 KIR2DS2P43631 304 aa9.24□□□□□ -0.93
MSH5-SAPCD1-205ENST00000476085 C15orf32Q32M92 178 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms