RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CHAC1Q9BUX1 264 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 DUSP23Q9BVJ7 150 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 RPP21Q9H633 154 aaKnown RBP7.72□□□□□ -1.17
COL6A3-210ENST00000473258 U3KQE9 123 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 A0A1B0GW64 132 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 A0A1W2PNR3 127 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 KNCNA6PVL3 124 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 LOXL3P58215 753 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 CDKN3Q16667 212 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 MOB3BQ86TA1 216 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 TMEM174Q8WUU8 243 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 C10orf35Q96D05 121 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 GPR82Q96P67 336 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 APOOQ9BUR5 198 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 SFXN3Q9BWM7 321 aa7.72□□□□□ -1.17
COL6A3-210ENST00000473258 MRPL27Q9P0M9 148 aaKnown RBP7.72□□□□□ -1.17
COL6A3-210ENST00000473258 NUP214P35658 2090 aaPredicted RBP7.71□□□□□ -1.17
COL6A3-210ENST00000473258 IGHV3-43A0A0B4J1X8 118 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 TRAV24A0A0B4J272 114 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 K7N7A8 449 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 WNT2P09544 360 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 IGHV3-43DP0DP04 118 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 CNRIP1Q96F85 164 aaPredicted RBP7.71□□□□□ -1.17
COL6A3-210ENST00000473258 RAX2Q96IS3 184 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 CLUHP3Q96NS8 147 aa7.71□□□□□ -1.17
COL6A3-210ENST00000473258 VWC2LB2RUY7 222 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 TSPOAP1O95153 1857 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 HOXD9P28356 352 aaPredicted RBP7.71□□□□□ -1.18
COL6A3-210ENST00000473258 ATP5G3P48201 142 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 UCNP55089 124 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 TMEM78Q5T7P6 136 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 TMEM178AQ8NBL3 297 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 EVPLQ92817 2033 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 VGLL1Q99990 258 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 SETBP1Q9Y6X0 1596 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 DOCK9Q9BZ29 2069 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 VWDEQ8N2E2 1590 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 ZNF638Q14966 1978 aaKnown RBP7.71□□□□□ -1.18
COL6A3-210ENST00000473258 A0A1B0GTI1 187 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 MRPS11P82912 194 aaKnown RBP7.71□□□□□ -1.18
COL6A3-210ENST00000473258 RBMY1FQ15415 496 aaKnown RBP7.71□□□□□ -1.18
COL6A3-210ENST00000473258 FAM110CQ1W6H9 321 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 RNF182Q8N6D2 247 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 ARPC1AQ92747 370 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 CTHRC1Q96CG8 243 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 PHLDA3Q9Y5J5 127 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 IGHV2-26A0A0B4J1V2 119 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 AHRRA9YTQ3 701 aa7.71□□□□□ -1.18
COL6A3-210ENST00000473258 ASIPP42127 132 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 AMN1Q8IY45 258 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 MESP1Q9BRJ9 268 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 MRPL32Q9BYC8 188 aaKnown RBP7.7□□□□□ -1.18
COL6A3-210ENST00000473258 HCSTQ9UBK5 93 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 KLF13Q9Y2Y9 288 aaPredicted RBP7.7□□□□□ -1.18
COL6A3-210ENST00000473258 ADGRB1O14514 1584 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 TRBV5-3A0A0A0MS03 114 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 SSR4P51571 173 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 NPC2P61916 151 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 CCL20P78556 96 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 SRSF2Q01130 221 aaKnown RBP7.7□□□□□ -1.18
COL6A3-210ENST00000473258 UTF1Q5T230 341 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 LAIR2Q6ISS4 152 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 RFLNAQ6ZTI6 216 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 FAM214BQ7L5A3 538 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 MVB12AQ96EY5 273 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 SPTBP11277 2137 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 CTLA4P16410 223 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 ADCYAP1P18509 176 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 FSTP19883 344 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 TMEM187Q14656 261 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 C8orf86Q6ZUL3 223 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 JMJD8Q96S16 334 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 TRAV8-3A0A0A6YYJ7 113 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 B4GALT1P15291 398 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 GTSCR1Q86UQ5 136 aa7.7□□□□□ -1.18
COL6A3-210ENST00000473258 RPL36A-HNRNPH2H7BZ11 118 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 NKX2-2O95096 273 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 CNTFRP26992 372 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 P2RY2P41231 377 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 DCAF12Q5T6F0 453 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 LILRA3Q8N6C8 439 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 GATAD1Q8WUU5 269 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 RNF126Q9BV68 326 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SPANXB1Q9NS25 103 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 FOLR3P41439 243 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 NANOS3P60323 173 aaKnown RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 UNC119Q13432 240 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SPRYD7Q5W111 196 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SPATA25Q9BR10 227 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 ITSN1Q15811 1721 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 MAP1BP46821 2468 aaKnown RBP7.69□□□□□ -1.18
COL6A3-210ENST00000473258 BCL9LQ86UU0 1499 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SPINT1O43278 529 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 BTCP35070 178 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 ZP4Q12836 540 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 TNXAQ16473 311 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 TCTEX1D4Q5JR98 221 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 SLC37A2Q8TED4 501 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 OR5P3Q8WZ94 311 aa7.69□□□□□ -1.18
COL6A3-210ENST00000473258 CLEC7AQ9BXN2 247 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms